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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattactgaatgactgttgggttctgcagatttgacattttcttgtactgatttttccccctgatctggaaaacatagGTATTCCTGTTACAATGGAAGTTGCTAGTGATCTGTTGGATAGGCAGGGGCCAATATACAGAGAAGATACAGCAGTTTTTGTTAGTCAGTCTGGTGAAAC

Basic information

species Vitis vinifera
transcript Vv13s0064g00050.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00050.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G005849_T03 (Zea mays), 3'ss of exon 5
--------------------------------------------gtaattactgaatgactgttgggttctgcagatttga------cattttcttgtactgatttttccccctgatctgg--aaaacatagGTATTCCTGTTACAATGGAAGTTGCTAGTGATCTGTTGGATAGGCAGGGGCCAATATACAGAGAAGATACAGCAGTTTTTGTTAGTCAGTCTGGTGAAAC
                                              ||    |       ||| |       ||||  | |       ||  | | |   | |  |||| || || | |      |  | |||||||||||| || ||||| ||||| |||||  || |||| || || || || || ||||||||||| || ||||||||||||||||| ||||| || ||
gtaagaccaatcaattaattactccagctgtattgcctataccaagaaaagtttggaatttgtcgaagcaatcagaccttagttaatgatcctttaggtttaacctttctccttgctttatttggatgacagGTATTCCTGTGACTATGGAGGTTGCAAGTGACTTGCTGGACAGACAAGGTCCCATCTACAGAGAAGACACTGCAGTTTTTGTTAGTCAATCTGGGGAGAC

upper sequence: Vv13s0064g00050.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G180155_T01 (Zea mays), 3'ss of exon 1
-------------------------------------------------------gtaattactgaatgactgttgggttctgcagatttgacattttcttgtactgatttttccc---cctgatctggaaaacatagGTATTCCTGTTACAATGGAAGTTGCTAGTGATCTGTTGGATAGGCAGGGGCCAATATACAGAGAAGATACAGCAGTTTTTGTTAGTCAGTCTGGTGAAAC
                                                       | | ||  | || |      |   |      ||    | ||   || | |   ||| |||    | | |||||||  |  ||||||||||||| || ||||| ||||| || ||  || |||| || || || || || |||||||||||  | ||||||||||||||||||||||| || ||
gtaagcccggtcaattactccagctgtgttgcctctttgtctagaaaaaaaaattggattttgtcaaagcaatcagaacttaattaatgattctttaagttttgcctctttctcctttgctttatctggagga--tagGTATTCCTGTGACTATGGAGGTTGCAAGCGACTTGCTGGACAGACAAGGTCCCATCTACAGAGAAGACGCCGCAGTTTTTGTTAGTCAGTCTGGAGAGAC

upper sequence: Vv13s0064g00050.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G24090.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaattactgaatgactgttgggttctgcagatttgacattttcttgtactgatttttccccctgatctggaaaacatagGTATTCCTGTTACAATGGAAGTTGCTAGTGATCTGTTGGATAGGCAGGGGCCAATATACAGAGAAGATACAGCAGTTTTTGTTAGTCAGTCTGGTGAAAC
|||||| ||     |    |  ||| |   ||||||| |||  ||  | || | |     |  |           ||||||||| || || |  |||||  ||||||||||||| | |||  |||| || |||||||||||||||||||| || || ||||| |||||||||||||||||
gtaattgctactaaaactgtatgttttcttgatttgaaattgactc-tgctaactgaagtctttc----------catagGTATACCAGTCAGTATGGAGATTGCTAGTGATCTATGGGACCGGCAAGGTCCAATATACAGAGAAGATACCGCGGTGTTTGTGAGTCAGTCTGGTGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcagatttgacattttcttgtactgatttttccccctgatctggaaaacatagGTATTCCTGTTACAATGGAAGTTGCTAGTGATCTGTTGGATAGGCAGGGGCCAATATACAGAGAAGATACAGCAGTTTTTGTTAGTCAGTCTGGTGAAAC
             attttctt  TA-rich tract