Sequence
atgc intronic sequence ATGC exonic sequence...gtggtgctgcacacttattgaacttgacaagcaacaatttaattattttgaaatcattgagatgggcacagcacaagtgtggtgactttatagtgctcagACTGTTTCAGGCAGACCTCCACCAGCAGCTTCCATGGCAGTTGGACAATTCTTTAACCCAGAGGAAGGGGAGACAGAGTTCTCTCCTCGCGCGTTGCTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0047g01140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os09g09360.1 (Oryza sativa), 3'ss of exon 9
---gtggtgctgcacacttattgaacttgacaagcaacaatttaattattttgaaatcattgagatgggcacagcacaagt-gtggtgactttatagtgctcagACTGTTTCAGGCAGACCTCCACCAGCAGCTTCCATGGCAGTTGGACAATTCTTTAACCCAGAGGAAGGGGAGACAGAGTTCTCTCCT-CGCGCGTTGCTTC
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ttcatggatataaacttttatcaatagaaatatattctaaat-gtttaccttcc--ctgctgaattgttaaaagtcgatgttattctgatcttct-gtatccagACAATTTCAGGTAGACCACCTCCAGCGGCATCTATGGCAGTAGGACAGTTCTTTAATCCAGAGGAAGGGACGAGTGCACTTTCTGCTGCCCGAATTATTG-
upper sequence: Vv13s0047g01140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G06860.1 (Glycine max), 3'ss of exon 10
--gtggtgctgcacacttattgaacttgacaagca-acaatttaattattttgaaatcattgagatgggcacagcacaagtgtggtgactttatagtgctcagACTGTTTCAGGCAGACCTCCACCAGCAGCTTCCATGGCAGTTGGACAATTCTTTAACCCAGAGGAAGGGGAGACAGAGTTCTCTCCTCGCGCGTTGCTTC
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gaatcatcctgcctataaatatgatgtattttctgtatgatctttgtagttgaaaatg--tgtgttccatatt-tgtgtgtgtaatgacaaagtggttctcagACTATTTCAGGAAGACCCCCGCCAGCAGCATCCATGGCAGTTGGACAGTTCTTTAACCCAGAGGAAGGAAATCAAGAGCTATCTCCATGGTTTATGCTGC
upper sequence: Vv13s0047g01140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G24220.1 (Glycine max), 3'ss of exon 10
gtggtgctgcacacttattgaacttgaca-agcaacaatttaattattttgaaatcattgagatgggcacagcac----aagtgtggtgactttatagtgctcagACTGTTTCAGGCAGACCTCCACCAGCAGCTTCCATGGCAGTTGGACAATTCTTTAACCCAGAGGAAGGGGAGACAGAGTTCTCTCCTCGCGCGTTGCTTC
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--gaatcatcctgcttat-aaatatgatgtattttctgtatggtc--tttgtagttgaaaatgtgtgttccatatttgtgtgtgtaatgacaatgtggttctcagACTATTTCAGGAAGACCCCCGCCAGCAGCATCCATGGCAGTTGGACAGTTCTTTAACCCAGAGGAAGGAAATCAAGAGCTATCTCCATGGTTTATGCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgaaatcattgagatgggcacagcacaagtgtggtgactttatagtgctcagACTGTTTCAGGCAGACCTCCACCAGCAGCTTCCATGGCAGTTGGACAATTCTTTAACCCAGAGGAAGGGGAGACAGAGTTCTCTCCTCGCGCGTTGCTTC
aaatcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggtgctgcacacttattgaacttgacaagcaacaatttaattattttgaaatcattgagatgggcacagcacaagtgtggtgactttatagtgctcagACTGTTTCAGGCAGACCTCCACCAGCAGCTTCCATGGCAGTTGGACAATTCTTTAACCCAGAGGAAGGGGAGACAGAGTTCTCTCCTCGCGCGTTGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - -tgcacac
- - - - - - - - - - - - - acaagca
- - - - - - - - - - - - - - - - - - - - - - - - - aaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtg