1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttgttcaaatgagataaacttaccctttctgctttgtccatatggagcctgctgctgcagtctttggttaactttgttcctggtacttgtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATGTTGGAAATGAGGATGTGGCCATTAATGGATTTGAAGAAGCCATAAAAT
species | Vitis vinifera |
transcript | Vv13s0047g00170.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: NGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|351047067|gb|FQ454677.1|FQ454677
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCCAAAGTTGCTGATGTGAACAGGAATEST: gi|28964625|gb|CB343658.1|CB343658
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|29782979|gb|CB348769.2|CB348769
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|352774116|gb|FQ474639.1|FQ474639
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: GCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|351038304|gb|FQ460996.1|FQ460996
genomic: GCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAA-GTTGCTGATGTGAAAAGGAATEST: gi|110362765|gb|EC926319.1|EC926319
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|110386747|gb|EC951369.1|EC951369
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|71866068|gb|DT015123.1|DT015123
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|351055326|gb|FQ441924.1|FQ441924
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|32457102|gb|CD798276.1|CD798276
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|352764964|gb|FQ473612.1|FQ473612
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|110363678|gb|EC927285.1|EC927285
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATEST: gi|351038515|gb|FQ464381.1|FQ464381
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAAC
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAAC
ggagcctgctgctgcagtctttggttaactttgttcctggtacttgtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATGTTGGAAATGAGGATGTGGCCATTAATGGATTTGAAGAAGCCATAAAAT
ggttaac putative branch site (score: 3)
ttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgttcaaatgagataaacttaccctttctgctttgtccatatggagcctgctgctgcagtctttggttaactttgttcctggtacttgtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAATGTTGGAAATGAGGATGTGGCCATTAATGGATTTGAAGAAGCCATAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - gataaac
- - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - -ccatatg
- - - - - - - - - - - - - - - - - - - - - - - - -cctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagtc