1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatatgcctgcttatttgtgctttttccctctgggatctatcttttttttttatcagaacctccgggatctatcttgggactaccttttaatttcgtgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGTGGAGGAAAGTGCCCATTGTGCCGAGCCCCGATTGTTGAGGTCATCCGA
species | Vitis vinifera |
transcript | Vv13s0019g05390.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGEST: gi|110362870|gb|EC926428.1|EC926428
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGEST: gi|110402602|gb|EC960544.1|EC960544
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGEST: gi|30302439|gb|CB979233.1|CB979233
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTEST: gi|110697361|gb|EE074284.1|EE074284
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTT
EST: GGAACTTGTTGTGTTTGTTGTGATAACCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAATTGGTTCGTGGEST: gi|110722021|gb|EE097887.1|EE097887
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAAA-TGTGCAAATGA-TTGGGTTC-TGEST: gi|30297155|gb|CB973949.1|CB973949
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGG-TTCGTG
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGEST: gi|110396940|gb|EC962647.1|EC962647
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGEST: gi|34362695|gb|CF404280.1|CF404280
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAANCTGAGCCAATGAGTTGGTTCGTGGEST: gi|110405556|gb|EC971098.1|EC971098
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
EST: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTTTTTATTGTACAG ATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
genomic: GGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgtatatgcct ... aaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGG
tgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGTGGAGGAAAGTGCCCATTGTGCCGAGCCCCGATTGTTGAGGTCATCCGA
ttgaaaaaaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgcctgcttatttgtgctttttccctctgggatctatcttttttttttatcagaacctccgggatctatcttgggactaccttttaatttcgtgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGTGGTGGAGGAAAGTGCCCATTGTGCCGAGCCCCGATTGTTGAGGTCATCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA