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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgatgcctagtaagttttgttgaatttgaattttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG

Basic information

species Vitis vinifera
transcript Vv13s0019g05360.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G34220.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------atgatgcctagtaagttttgttgaatttgaattttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG
                                                                ||||||  | |||  ||| || |   |  | ||||||||||| |||||| |||| ||| ||| ||||||| |||||||||||||| |||||| || || | ||||||||| |  |||| ||  |||||||||| ||                         
gaatttaatatgctgtggtttgtataactagttatgttttgtggtgaataattattggtgagtttgatgctaattaaaatttatttatcatacactttagGTGTTTACTTCTCAGGTTATCAGGGTGTTCCATACACATATGTGCTTCCGTCTGTTGCACCACCGGCATACAATGCAGTGAATTACAGACCAAATGGTGC-------------------------

upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G34220.2 (Glycine max), 3'ss of exon 4
------------------------------------------------atgatgcctagtaagttttgttgaatttgaattttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTG---GAGGAAAGTTTCAGAATAACAAG
                                                 ||||||  | |||  ||| || |   |  | ||||||||||| |||||| |||| ||| ||| ||||||| |||||||||||||| |||||| || || | ||||||||| |  |||| ||  |||||||||| ||||   |||||||| |             
tggtttgtataactagttatgttttgtggtgaataattattggtgagtttgatgctaattaaaatttatttatcatacactttaggtgtttacttctcagGTTATCAGGGTGTTCCATACACATATGTGCTTCCGTCTGTTGCACCACCGGCATACAATGCAGTGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCT-------------

upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G33330.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------atgatgcctagtaagttttgttgaatttgaattttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG
                                                                |||||   | |||  ||| || |   |  | ||||||||||| |||||| |||| ||| ||| ||||||| ||||| |||||||| |||||| || || | ||||||||| |  |||| ||  |||| |||||  |                         
gaatttaatatgctgtgctttgtataagtagttatgttttgtgatgaataattattggtgagtttgatgataattaaaatttatttatcatacactttagGTGTTTACTTCTCGGGTTATCAAGGTGTTCCATACACATACGTGCTTCCATCTGTTGCACCACCGGCATACAATGCAGTGAATTACAGACCCAATGGTAC-------------------------

upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G04430.1 (Arabidopsis thaliana), 3'ss of exon 5
atgatgcctagtaagttttgttgaatttga-attttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG
    |  || |||||||   || || | |  ||||||||| |||||| ||| |||||||| |||  ||||||| | |||| ||||||||||||| ||||||| | |||||||||| | ||||| | ||| || ||  ||||||| |||| ||| ||  |||||
-aattctcttgtaagttcctttaaactcggcattttaggtcttttctactctggttttcatggtcctccatatgcgtatgcgcttccttctgttgcaacagCGGGATACAATTCGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAG

upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G04430.2 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------------------------------------------atgatgc-ctagtaagttttgttgaatttga-attttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG
                                                              | || | || |||||||   || || | |  ||||||||| |||||| ||| |||||||| |||  ||||||| | |||| ||||||||||||| ||||||| | |||||||||| | ||||| | ||| || ||  |                         
tcatctcacatggaccttctttccattttgagggttgtgtatgatggttgtctgttgtagcttaattctcttgtaagttcctttaaactcggcattttagGTCTTTTCTACTCTGGTTTTCATGGTCCTCCATATGCGTATGCGCTTCCTTCTGTTGCAACAGCGGGATACAATTCGGTTAACTACGCACCCAACGGTTC-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71866666|gb|DT015721.1|DT015721
EST:     CATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: CATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351046365|gb|FQ452981.1|FQ452981
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|352785971|gb|FQ481765.1|FQ481765
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351057061|gb|FQ448578.1|FQ448578
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351055155|gb|FQ440494.1|FQ440494
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351043628|gb|FQ451559.1|FQ451559
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351037387|gb|FQ460586.1|FQ460586
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|349827032|gb|FQ421305.1|FQ421305
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351052907|gb|FQ453894.1|FQ453894
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTTGATGAACTATGGATCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351047124|gb|FQ454734.1|FQ454734
EST:     AGAGGATCCTCATTACACACAGTTTATGAACGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|71865533|gb|DT014588.1|DT014588
EST:     CATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: CATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351047391|gb|FQ451903.1|FQ451903
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351038420|gb|FQ461112.1|FQ461112
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351031620|gb|FQ459877.1|FQ459877
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|161713236|gb|FC063668.1|FC063668
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351047415|gb|FQ451927.1|FQ451927
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|77585763|gb|DV221978.1|DV221978
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351052809|gb|FQ456536.1|FQ456536
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|352793787|gb|FQ481941.1|FQ481941
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351052237|gb|FQ452391.1|FQ452391
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351053072|gb|FQ456679.1|FQ456679
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351056381|gb|FQ454242.1|FQ454242
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|349833330|gb|FQ416708.1|FQ416708
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351054352|gb|FQ450435.1|FQ450435
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351046045|gb|FQ441428.1|FQ441428
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|352791390|gb|FQ480969.1|FQ480969
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGATCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351031627|gb|FQ459884.1|FQ459884
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|352793790|gb|FQ481944.1|FQ481944
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTT-C
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|110731764|gb|EE106471.1|EE106471
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCGAATG
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATG
EST: gi|110391242|gb|EC956204.1|EC956204
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|352786092|gb|FQ481887.1|FQ481887
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351035492|gb|FQ463337.1|FQ463337
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|352790487|gb|FQ478127.1|FQ478127
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351029639|gb|FQ427479.1|FQ427479
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|351032704|gb|FQ462418.1|FQ462418
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|352786228|gb|FQ478839.1|FQ478839
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: gi|110376153|gb|EC941197.1|EC941197
EST:     AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG                         CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG
                                  tgcttccttctgttcc  CT-rich tract
                       atatacatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgatgcctagtaagttttgttgaatttgaattttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- gatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttct