1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgatgcctagtaagttttgttgaatttgaattttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG
species | Vitis vinifera |
transcript | Vv13s0019g05360.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351046365|gb|FQ452981.1|FQ452981
genomic: CATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|352785971|gb|FQ481765.1|FQ481765
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351057061|gb|FQ448578.1|FQ448578
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351055155|gb|FQ440494.1|FQ440494
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351043628|gb|FQ451559.1|FQ451559
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351037387|gb|FQ460586.1|FQ460586
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|349827032|gb|FQ421305.1|FQ421305
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351052907|gb|FQ453894.1|FQ453894
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTTGATGAACTATGGATCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351047124|gb|FQ454734.1|FQ454734
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAACGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|71865533|gb|DT014588.1|DT014588
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: CATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351047391|gb|FQ451903.1|FQ451903
genomic: CATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351038420|gb|FQ461112.1|FQ461112
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351031620|gb|FQ459877.1|FQ459877
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|161713236|gb|FC063668.1|FC063668
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351047415|gb|FQ451927.1|FQ451927
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|77585763|gb|DV221978.1|DV221978
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351052809|gb|FQ456536.1|FQ456536
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|352793787|gb|FQ481941.1|FQ481941
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351052237|gb|FQ452391.1|FQ452391
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351053072|gb|FQ456679.1|FQ456679
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351056381|gb|FQ454242.1|FQ454242
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|349833330|gb|FQ416708.1|FQ416708
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351054352|gb|FQ450435.1|FQ450435
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351046045|gb|FQ441428.1|FQ441428
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|352791390|gb|FQ480969.1|FQ480969
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGATCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351031627|gb|FQ459884.1|FQ459884
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|352793790|gb|FQ481944.1|FQ481944
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTT-CEST: gi|110731764|gb|EE106471.1|EE106471
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCGAATGEST: gi|110391242|gb|EC956204.1|EC956204
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATG
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|352786092|gb|FQ481887.1|FQ481887
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351035492|gb|FQ463337.1|FQ463337
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|352790487|gb|FQ478127.1|FQ478127
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351029639|gb|FQ427479.1|FQ427479
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|351032704|gb|FQ462418.1|FQ462418
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|352786228|gb|FQ478839.1|FQ478839
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCEST: gi|110376153|gb|EC941197.1|EC941197
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
EST: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAG CAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
genomic: AGAGGATCCTCATTACACACAGTTTATGAATGCCCCATTTTCATATGCAGgtgtaatttc ... gttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTC
ttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG
tgcttccttctgttcc CT-rich tract
atatacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgcctagtaagttttgttgaatttgaattttaggtgttttcttctccggttttcacggtattccatatacatatgtgcttccttctgttccaacagCAGCATACAATTCGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- gatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttct