Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatctaatttactttatgagaagtcacaaacttgctttcagaagggttctgcttcattttcttgtgttttgatagGCAGACACCTCCAGCTCCCAGATTTGATCATACAGCTGCAGTGCATGCGGAGCGCTACCTTCTCATTTTTGGCGGTTGTTCGCATTCAATATTTTTCAAT

Basic information

species Vitis vinifera
transcript Vv13s0019g05290.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05290.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G34180.1 (Glycine max), 3'ss of exon 7
gtaagt---atctaatttactttatgagaagtcacaaacttgctt-tcagaagggttctgctt--------cattttcttgtgttttgatagGCAGACACCTCCAGCTCCCAGATTTGATCATACAGCTGCAGTGCATGCGGAGCGCTACCTTCTCATTTTTGGCGGTTGTTCGCATTCAATATTTTTCAAT
||||||   ||||| |||||  | | ||||         |      | |||   ||||    |        || |||||||  |||||||||||||||||||||| |||| |||| ||||||| |||||||  | || |  ||||| |||||||| || ||||| ||||| || ||||| || || ||||||
gtaagtggtatctattttacactttcagaaagtgtgttttcatgcattagagaagttccatatgaccataccaatttcttgcattttgatagGCAGACACCTCCATCTCCTAGATATGATCATTCAGCTGCTATTCAAGGAGAGCGGTACCTTCTAATATTTGGTGGTTGCTCTCATTCTATCTTCTTCAAT

upper sequence: Vv13s0019g05290.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G33350.1 (Glycine max), 3'ss of exon 7
gtaagt---atctaatttactttatgagaagtcacaa--acttgctttcagaagggttctgctt--------cattttcttgtgttttgatagGCAGACACCTCCAGCTCCCAGATTTGATCATACAGCTGCAGTGCATGCGGAGCGCTACCTTCTCATTTTTGGCGGTTGTTCGCATTCAATATTTTTCAAT
||||||   ||||| |||||  | | ||||         || |||||| |||   ||||    |        || |||||||  ||||||||||||||||||||||||||| ||||  |||||| | |||||  | || |  ||||| |||||||| || ||||| ||||| || ||||| || || ||||||
gtaagtggtatctattttacactttcagaaagtgtgtttacatgcttt-agagaagttccatatgaccataccaatttcttgcattttgatagGCAGACACCTCCAGCTCCTAGATACGATCATTCCGCTGCTATTCAAGGAGAGCGGTACCTTCTAATATTTGGTGGTTGCTCTCATTCTATCTTCTTCAAT

upper sequence: Vv13s0019g05290.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G04420.1 (Arabidopsis thaliana), 3'ss of exon 7
------------------------------gtaagtatctaatttac-tttatgagaagtca--caaacttg-ctttcag--aagggttctgcttcattttcttgtgttttgatagGCAGACACCTCCAGCTCCCAGATTTGATCATACAGCTGCAGTGCATGCGGAGCGCTACCTTCTCATTTTTGGCGGTTGTTCGCATTCAATATTTTTCAAT
                               |      |    |||  ||||    |  ||   | | || | ||| ||   ||  | ||||  |  |||| || ||  | |||||||||||||  |||| ||||||||||||||| ||||||||    ||| | || ||||||||  | |||||||| |||||||| ||||| || || | || |
gtaagtttatgtaaaagtgcaggcagctagatctaggccatgcttatgtttactgcacttctgtctacctcgtcttacaagtaaatgctctgtattgtttttttttggat-gatagGCAGACACGCCCAGTTCCCAGATTTGATCACACAGCTGCCACACATTCTGATCGCTACCTCTTGATTTTTGGTGGTTGTTCTCATTCGATTTTCTACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtcacaaacttgctttcagaagggttctgcttcattttcttgtgttttgatagGCAGACACCTCCAGCTCCCAGATTTGATCATACAGCTGCAGTGCATGCGGAGCGCTACCTTCTCATTTTTGGCGGTTGTTCGCATTCAATATTTTTCAAT
                                    ttttcttgtgtttt  CT-rich tract
                                ttcatttt  TA-rich tract