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gtaagaagcattgatttttctttcgttcattcttcttttgtgtgagcatgtgtgtgtgtgtgtgttttttttattgatgttcttggtgtgcagtcctttgtcctccctgtcatttatgattgtgtttcctttcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG
species | Vitis vinifera |
transcript | Vv13s0019g05250.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|34550427|gb|CF518645.1|CF518645
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|351028003|gb|FQ425904.1|FQ425904
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCCAACATACCTGCAAAGAAEST: gi|32249928|gb|CD715747.1|CD715747
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGANAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|30137894|gb|CB923232.1|CB923232
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|27578522|gb|CB001217.1|CB001217
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|351040604|gb|FQ438148.1|FQ438148
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|37190333|gb|CF609682.1|CF609682
genomic: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|110392317|gb|EC957652.1|EC957652
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|351046814|gb|FQ454424.1|FQ454424
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|349811478|gb|FQ409474.1|FQ409474
genomic: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|18458011|gb|BM436289.1|BM436289
genomic: CAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCAEST: gi|29785366|gb|CB342287.2|CB342287
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
EST: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
genomic: GCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAAgtaagaagca ... tcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCA
tgtgcagtcctttgtcctccctgtcatttatgattgtgtttcctttcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG
ttgtgtttcctttcct CT-rich tract
atttatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagcattgatttttctttcgttcattcttcttttgtgtgagcatgtgtgtgtgtgtgtgttttttttattgatgttcttggtgtgcagtcctttgtcctccctgtcatttatgattgtgtttcctttcctatgcagTGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA