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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattgttcacagaattttggtatgatctccaaaagggttttacattcttggacaatttttattcaatagtgttctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG

Basic information

species Vitis vinifera
transcript Vv13s0019g04310.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G08170.1 (Glycine max), 3'ss of exon 6
gtgagtattgttcacagaattttggtatgatctccaaaagggttttacattcttggacaatttttattcaatagtgttctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG
|||||||    |       ||||| ||   ||   ||| |    ||  ||| |   | | ||   |      | |    ||||||||||| |||||||||||||||||| |||| |||||  | || || ||||     |||  ||||   ||||
gtgagtacaactgcatatgttttgatagtttcagtaaatgtcccttgtattgtcaaa-agttaaaaagattcactaccttcatgcagATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCCCGATTTGCCTCTTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351051564|gb|FQ450116.1|FQ450116
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGTACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|351038272|gb|FQ460964.1|FQ460964
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|351046934|gb|FQ454544.1|FQ454544
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|45771650|gb|CN007502.1|CN007502
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349809523|gb|FQ414413.1|FQ414413
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|351038723|gb|FQ464589.1|FQ464589
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|110366533|gb|EC930443.1|EC930443
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349809479|gb|FQ414369.1|FQ414369
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349811587|gb|FQ409583.1|FQ409583
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349822732|gb|FQ398119.1|FQ398119
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|349814723|gb|FQ409946.1|FQ409946
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|110426990|gb|EC993420.1|EC993420
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
EST: gi|32459794|gb|CD800968.1|CD800968
EST:     GCTCCTTTCTTATT                         ATCTTTGAAAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAA
genomic: GCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTG--AAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAA
EST: gi|351028489|gb|FQ444770.1|FQ444770
EST:     TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATT                         ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT
genomic: TCTCGTGGGCTCTCAGGTGTCAAGCTTTACATGGTTGCTCCTTTCTTATTgtgagtattg ... tctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaaaagggttttacattcttggacaatttttattcaatagtgttctcatgcagATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG
                                          tgttctc  CT-rich tract
                        acaatttttattcaat  TA-rich tract