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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctagtgtttcttgtgaaataataattttgaaaagtgatgctgctgttgctttctcttcttctgacgctgtttcttgatggttgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAGATTTGAAATTTCTGATGAGGATAGGGGTCACACCTTGGGAGGTGCCCCA

Basic information

species Vitis vinifera
transcript Vv13s0019g04120.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408617|gb|EC974254.1|EC974254
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|32460792|gb|CD801966.1|CD801966
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|110689183|gb|EE065183.1|EE065183
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGA
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGA
EST: gi|110388511|gb|EC953269.1|EC953269
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|110418019|gb|EC984128.1|EC984128
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|110381307|gb|EC946633.1|EC946633
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|351037220|gb|FQ457053.1|FQ457053
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAACTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGATGATTATGTTGTGGAAA
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAA-
EST: gi|22008865|gb|BQ793899.1|BQ793899
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|30255752|gb|CB971884.1|CB971884
EST:     GACCCAGGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|110389130|gb|EC953946.1|EC953946
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|349828743|gb|FQ418478.1|FQ418478
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
EST: gi|351017619|gb|FQ435972.1|FQ435972
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         AACAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGT
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGT
EST: gi|110402278|gb|EC959746.1|EC959746
EST:     GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAG                         ACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG
genomic: GACCCAAGTGATGAGTTTGCATTCTCTACATTTTTCCCTGAATTTCTAAGgtaatctagt ... tgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatctagtgtttcttgtgaaataataattttgaaaagtgatgctgctgttgctttctcttcttctgacgctgtttcttgatggttgacatgcagACCAGTGATTGATCCCATTGGATCAGTATTTGGACGATTATGTTGTGGAAGATTTGAAATTTCTGATGAGGATAGGGGTCACACCTTGGGAGGTGCCCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT