Sequence
atgc intronic sequence ATGC exonic sequence...ctatctagctgagttcatgttactttgggtccttagtttacagttcttaagaattattttgtaatctcatattgacatttgtaatttaaaaaaatttcagATCCCAACAAATGGTGCTGGTTTAATTGAGTACAGGTGCCACCCCTTTTGGTCCCAGAAATATTGCCCATCGCATGAGCATGATAATGTAGCTCGTTGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g02430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G41920.1 (Glycine max), 3'ss of exon 4
ctatctagctgagttca-tgttactttgggtccttagtttacagttcttaagaattattttgtaatctcatattgacatttgtaa---tttaaaaaaatttcagATCCCAACAAATGGTGCTGGTTTAATTGAGTACAGGTGCCACCCCTTTTGGTCCCAGAAATATTGCCCATCGCATGAGCATGATAATGTAGCTCGTTGCT
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-aaaatgattacctctggtctttcatttaacctatcatcttca-ttcttcacagttaagaag-gatctt-tattaacacaaatgactttttatttgaatttcagATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCGCAAAAGTATTGTCCATCTCATGAGTATGATAATACAGCTCGCTGCT
upper sequence: Vv13s0019g02430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G07060.1 (Glycine max), 3'ss of exon 5
ctatctagctgagttcatgttactttgggtccttagttta--cagt--tcttaagaattattttgtaatctcatattgacatttgtaa---tttaaaaaaatttcagATCCCAACAAATGGTGCTGGTTTAATTGAGTACAGGTGCCACCCCTTTTGGTCCCAGAAATATTGCCCATCGCATGAGCATGATAATGTAGCTCGTTGCT
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--gcctagtaaaa---agattacctctggtctttcatttagcccatcatcttcacagttaataaggagctt--tattaacactaatgactttttattttaatttcagATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCT
upper sequence: Vv13s0019g02430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G34560.1 (Glycine max), 3'ss of exon 8
-ctatctagctgagttcatgttactttgggtccttagtttacagttcttaagaattattttgtaatctcatattgacatttgtaatt-taaaaaaatttcagATCCCAACAAATGGTGCTGGTTTAATTGAGTACAGGTGCCACCCCTTTTGGTCCCAGAAATATTGCCCATCGCATGAGCATGATAATGTAGCTCGTTGCT
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atcagaagacttctcctatgtgtctactacta-ttggtttgtaatctttttacagtagatgaaaatca-agattaacacttgtgattgtctttcactttcagATACCAATAAATGCTGCTGGTTTGATTGAATATAGATGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAATATGATAATACAGCTCGGTGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttaagaattattttgtaatctcatattgacatttgtaatttaaaaaaatttcagATCCCAACAAATGGTGCTGGTTTAATTGAGTACAGGTGCCACCCCTTTTGGTCCCAGAAATATTGCCCATCGCATGAGCATGATAATGTAGCTCGTTGCT
tattgac putative branch site (score: 2)
taatctcatattgaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatctagctgagttcatgttactttgggtccttagtttacagttcttaagaattattttgtaatctcatattgacatttgtaatttaaaaaaatttcagATCCCAACAAATGGTGCTGGTTTAATTGAGTACAGGTGCCACCCCTTTTGGTCCCAGAAATATTGCCCATCGCATGAGCATGATAATGTAGCTCGTTGCT
- - ctagctg
- - - - - - gttcatg