Sequence
atgc intronic sequence ATGC exonic sequencegtatacgattgtatatcctttatcatatacatttctgtttatctatgttttaaactcaaaacatctactactccatggatcttttttcttttcttttctttgtttctcttatagaattatgtggacctgaaaacattgtctaaacattacttacatgcagatataaatttctaaatttttatgtagGTAGATGTTGTTATATTGGAGGTTGGATTAGGAGGAAGGCTTGATGCAACAAATGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g02390.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G41870.1 (Glycine max), 3'ss of exon 4
gtatacgattgtatatcctttatcatatacatttctgtttatctatgttttaaactcaaaacatctactactccatggatcttttttcttttcttttctttgtttctcttatagaattatgtggacctgaa--aacattgtctaaacattacttacatgcagatataaa------tttctaaatttttatgtagGTAGATGTTGTTATATTGGAGGTTGGATTAGGAGGAAGGCTTGATGCAACAAATGTG
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---------------------------------------------------------------------------------------------cgtgctttaatttctacgaaaaattgttcaattatatactatctttttgtgtatgttg-ttatgaatggataaaagcttttctttctgaaattttatgtagGTAGATGTTGCTATAATGGAGGTAGGATTAGGTGGAAAATACGATGCAACAAATGTG
upper sequence: Vv13s0019g02390.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G07100.1 (Glycine max), 3'ss of exon 5
gtatacgattgtatatcctttatcatatacatttctgtttatctatgttttaaactcaaaacatctactactccatggatcttttttcttttcttttctttgtttctcttatagaattatgtggacctgaaaacattgtctaaacattacttacatgcagatataaatttctaaatttttatgtagGTAGATGTTGTTATATTGGAGGTTGGATTAGGAGGAAGGCTTGATGCAACAAATGTG
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-----------------------------------------------------------------------------------gtttgatccccatgctttaatttctacgaaaaattgt-tgaatat--atatgttgttgtgaa--tggttaaaagctttttt----ttctgaaattttatgtagGTCGATGTTGCTATAATGGAGGTAGGATTAGGTGGAAAATACGATGCAACAAATGTG
upper sequence: Vv13s0019g02390.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G03820.1 (Glycine max), 3'ss of exon 6
gtatacgattgtatatcctttatcatatacatttctgtttatctatgttttaaactcaaaacatctactactccatggatcttttttcttttcttttctttgtttctcttatagaattatgtggacctgaaaacattgtctaaacattac-ttacatgcagatataaatttctaaattt---ttatgtagGTAGATGTTGTTATATTGGAGGTTGGATTAGGAGGAAGGCTTGATGCAACAAATGTG
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----------------------------------------------------------------------------------ggtttgatccatgtgcttaaatacctacattgagtcgttccattctgataccacttcttgtatattttactaccaatgaatagaagcaactttatttcttttatgcaGGTAGATGTTTCTATAATGGAGGTTGGATTAGGTGGAAAATATGATGCAACGAATGT-
upper sequence: Vv13s0019g02390.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G05980.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatacgattgtatatcctttatcatatacatttctgtttatctatgttttaaactcaaaacatctactactccatggatcttttttcttttcttttctttgtttctcttatagaattatg-tggacctgaaaacattgtctaaacattacttacatgcaga-tataaatttctaaatttttatgtagGTAGATGTTGTTATATTGGAGGTTGGATTAGGAGGAAGGCTTGATGCAACAAATGTG
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---------------------------------------------------------------------gtttgataccagtctttaccttggctgactatttttcttactcagtgacatgatagataaactaacatcatgttctctttattgatataaggggttctgctttttgcttctttatgcagGTAGATGCTGCTATATTGGAGGTTGGATTAGGTGGAAAGTTTGATGCCACCAATGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacattgtctaaacattacttacatgcagatataaatttctaaatttttatgtagGTAGATGTTGTTATATTGGAGGTTGGATTAGGAGGAAGGCTTGATGCAACAAATGTG
tttttat CT-rich tract
agatataaatttctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatacgattgtatatcctttatcatatacatttctgtttatctatgttttaaactcaaaacatctactactccatggatcttttttcttttcttttctttgtttctcttatagaattatgtggacctgaaaacattgtctaaacattacttacatgcagatataaatttctaaatttttatgtagGTAGATGTTGTTATATTGGAGGTTGGATTAGGAGGAAGGCTTGATGCAACAAATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA