Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcagaagtacattatcctaaagaagaaaaggaaaccagacattagacattgagcaactgatcatttagatctgtacacttagaataaactagtactgaaacactcacaactgatgacttcttctgtccaaactgattttgctaacctaagatgtcactgtcttggtccagGCTGTGCTGAATGTGGGTGGGATTGTACTGAATGCTCTGGCTATAGAGCATTTTATTCTCCGGCACCCATGTGAATCAAAACAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g01510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G07390.1 (Glycine max), 3'ss of exon 6
gtaagtcagaagtacattatcctaaagaagaaaaggaaaccagacattagacattgagcaactgatcatttagatctgtacacttagaataaactagtactgaaacactcacaactgatgacttcttctgtccaaactgattttgctaacctaagatgtcactgtcttggtccagGCTGTGCTGAATGTGGGTGGGATTGTACTGAATGCTCTGGCTATAGAGCATTTTATTCTCCGGCACCCATGTGAATCAAAACAT
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-------------------------gtatgtcagtgaga--aatctatagaaacggagcaacttttttttttttttt-----tctggaa-------gttgtaaagcatgaacatttattttttcttagtgattgtggt-attatattaac-tgtgtagctac-gtattgacacagGCTGCAATGAATGTAGGAGGGATAGTACTGAATGCTCTGGCTATCGAACACTTTATTCTTCGGCACCCATGTGAATCAAAACAT
upper sequence: Vv13s0019g01510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G41560.1 (Glycine max), 3'ss of exon 6
gtaagtcagaagtacattatcctaaagaagaaaaggaaaccagacattagacattgagcaactgatcatttagatctgtacacttagaataaactagtactgaaacactcacaactgatgacttcttctgtccaaactgattttgctaacctaagatgtcactgtcttggtccagGCTGTGCTGAATGTGGGTGGGATTGTACTGAATGCTCTGGCTATAGAGCATTTTATTCTCCGGCACCCATGTGAATCAAAACAT
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----------------------------------gtatgtcagtgag-aaatctgtagtaactgagcaact---tctttttttctacaa-------gttgtgaagcatgaacagttattttttcttagtgattgtggt-attatattagc-tgtgtagctac-gtattgacacagGCTGCAATGAACGTAGGAGGGATAGTACTGAATGCACTGGCTATCGAACACTTTATTCTTCGGCACCCATGTGAATCAAAACAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttcttctgtccaaactgattttgctaacctaagatgtcactgtcttggtccagGCTGTGCTGAATGTGGGTGGGATTGTACTGAATGCTCTGGCTATAGAGCATTTTATTCTCCGGCACCCATGTGAATCAAAACAT
tgctaac putative branch site (score: 1)
ctgtctt putative PPT
tgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtcagaagtacattatcctaaagaagaaaaggaaaccagacattagacattgagcaactgatcatttagatctgtacacttagaataaactagtactgaaacactcacaactgatgacttcttctgtccaaactgattttgctaacctaagatgtcactgtcttggtccagGCTGTGCTGAATGTGGGTGGGATTGTACTGAATGCTCTGGCTATAGAGCATTTTATTCTCCGGCACCCATGTGAATCAAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA