1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatcttatttagtgttgaggtctcatgacaattggcagtatgtgggtctatgatttcacactcatacttgatgggctttttcttcttcctctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCAACACAATTAAGAAGTTGGCTTCTTACAAACTTCAATCCACATTGGCTA
species | Vitis vinifera |
transcript | Vv13s0019g01070.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GACGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|352794375|gb|FQ481606.1|FQ481606
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GACGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|351048097|gb|FQ442067.1|FQ442067
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GACGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|352786528|gb|FQ479735.1|FQ479735
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GACGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|351038424|gb|FQ461116.1|FQ461116
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|351054685|gb|FQ462715.1|FQ462715
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCGCCGTTGCTTGAATAAG GACGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|351035218|gb|FQ458575.1|FQ458575
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|71874359|gb|DT023414.1|DT023414
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|351032693|gb|FQ462407.1|FQ462407
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GACGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|351044866|gb|FQ449120.1|FQ449120
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GACGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|352795590|gb|FQ480178.1|FQ480178
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|352793767|gb|FQ481122.1|FQ481122
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GACGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCEST: gi|77585559|gb|DV221873.1|DV221873
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
EST: CGATGTTAAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAG GATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
genomic: CAATGTTGAACCTGAAATCAGTTATTGAAGCTCACCGTTGCTTGAATAAGgtcacttatt ... ctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCC
gtctatgatttcacactcatacttgatgggctttttcttcttcctctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCAACACAATTAAGAAGTTGGCTTCTTACAAACTTCAATCCACATTGGCTA
acttgat putative branch site (score: 5)
ctttttcttcttcctc putative PPT
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcttatttagtgttgaggtctcatgacaattggcagtatgtgggtctatgatttcacactcatacttgatgggctttttcttcttcctctgttttaagGATGTGCAAATTGGGCAAAGAATGATCACAATTTCCTCCGTAGGGGTTCCCAACACAATTAAGAAGTTGGCTTCTTACAAACTTCAATCCACATTGGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - tcatgac
- - - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatggg