Sequence
atgc intronic sequence ATGC exonic sequence...tctgttgtcaaaattcttttggaagtttcctttatactgtgccactgtcatttgaatatcagtaccatgatgcttctcttatatttttgttgttttgcagGATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G029055_T02 (Zea mays), 3'ss of exon 6
-tctgttgtcaaaattcttttggaagtttcctttatactgtgccactgtcatttgaatatcagtaccatgatgcttctcttatatttttgttgttttg---cagGATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAA
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ggccaatgctaacatacc----aatgttgatttggcaagagaaaaatattatatggatttctgatttttttaatatgtgctgactttttgtgcgtttgtctcagGACATATTACGGTTTCATGCAGTTTATTGGCCAGCCATGTTAATGTCAGCAGGTTTAAGTGTTCCTGATACAGTTTTTGGTCATGGATTCTTGACTAAG
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G23250.1 (Glycine max), 3'ss of exon 6
-tctgttgtcaaaattcttttggaagtttcctttatactgtgccactgtcatttgaatatcagtaccatgatgcttctcttatatttttgttgttttgcagGATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAA
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gcaacccgtgatatatgtttgtgaatgaatttttatgatatttaagaatagctaaaacattga-atttctatatttctttaatgattttgttactctgtagGATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAG
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G43550.1 (Glycine max), 3'ss of exon 6
---tctgttgtcaaaattcttttggaagtttcctttatactgtgccactgtcatttgaatatcagtaccatgatgcttctcttatatttttgttgttttgcagGATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAA
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caacccatgatatatgttagttaatgaattt--tttatgatatgaaagaatagctaaaacattgattttgt-atatttctttaatgattttgttactctatagGATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30255117|gb|CB971564.1|CB971564EST: AAAGTGCAGTTTCTTCAGGTTGGCCTGCCTCGCTACACTTAATTGGCAAG GATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCT
genomic: AAAGTGCAGTTTCTTCAGGTTGGCCTGCCTCGCTACACTTAATTGGCAAGgtatcactac ... tgttttgcagGATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcatttgaatatcagtaccatgatgcttctcttatatttttgttgttttgcagGATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAA
tttttgtt CT-rich tract
ttatatttttgttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctgttgtcaaaattcttttggaagtttcctttatactgtgccactgtcatttgaatatcagtaccatgatgcttctcttatatttttgttgttttgcagGATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
tctgttg
- - - -tcaaaat
- - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - -tgccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgat