Sequence
atgc intronic sequence ATGC exonic sequence...gattgcttctgtgcttatgtaactgagaataaatcttcaatttgcatggttgaggtccccctatttcccttttctcacagtatcttttaatatggatcagTGAACAACAACCTTTGCGATTGAATCCTGTGGAGGTGCGTGAAGTCATTGCTGCAGTTTGCTCAGACACAGCTTCACCAAATACTAACCTCATGACGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G43560.2 (Glycine max), 3'ss of exon 6
gattgcttctgtgcttatgtaactgagaataaatcttcaatt-tgcatggttgaggtccccctatttcccttttctcacagtatcttttaatatggatcagTGAACAACAACCTTTGCGATTGAATCCTGTGGAGGTGCGTGAAGTCATTGCTGCAGTTTGCTCAGACACAGCTTCACCAAATACTAACCTCATGACGATG---
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-ttcattgaaaaaaatttacatttgttgatgatacactgattatttatagttgttatattctctttttatctttcactaaagataatcttatgctgaccagTGAGCAACAACCTTTGCGATTGAATCCTGCTGAGGTATGTGAAGTCCTTGCTGCTGTTTGCTCAGA---GCCTTCCCAAAATACCAATGTTATGATGTCAACT
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G23240.1 (Glycine max), 3'ss of exon 9
gattgcttctgtgcttatgtaactgagaataaatcttcaatttgca--tggttgaggtccccctatttcccttttctcacagtatcttttaatatggatcagTGAACAACAACCTTTGCGATTGAATCCTGTGGAGGTGCGTGAAGTCATTGCTGCAGTTTGCTCAGACACAGCTTCACCAAATACTAACCTCATGACGATG---
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-attgaaaaaatttaca-atttttggtgatatgttgattatttttagttgatttattctctttttatatatctttcactaaagataattttatgttgaccagTGAGCAACAACCTTTGCGATTGAATCCTGCTGAGGTATGTGAAGTCTTTGCTGCTGTTTGCTCAGA---GCCTTCCCCAAATACCAATGTTATGATGATGTCA
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G10370.1 (Glycine max), 3'ss of exon 6
-gattgcttctgtgcttatg-taactgagaataaatcttcaatttgcatggttgaggtccccctatttcccttttctcacagtatcttttaatatggatcagTGAACAACAACCTTTGCGATTGAATCCTGTGGAGGTGCGTGAAGTCATTGCTGCAGTTTGCTCAGACACAGCTTCACCAAATACTAACCTCATGACGATG
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gtattcagtgaagaattataatttttttttatcatactctagctgttttaattga--tttatttgtgtttctacatctaaatgttctcttatgcctgaccagTGAGCAACAACCTCTGCGATTGAACCCTGCTGAGGTACAAGATGTTATTGCTGCAGTTTGCTCAGAGGCTTATTCCCCAAATACCAATGTTACTACAGCA
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G52540.1 (Glycine max), 3'ss of exon 3
-gattgcttctgtgcttatg--taactgagaataaatcttcaatttgcatggttgaggtccccctatttcccttttctcacagtatcttttaatatggatcagTGAACAACAACCTTTGCGATTGAATCCTGTGGAGGTGCGTGAAGTCATTGCTGCAGTTTGCTCAGACACAGCTTCACCAAATACTAACCTCATGACGATG
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gtatacagtgaagaattataatttttttttagcatactctagctgttaacaattgatttatttgtgtttc---tacatctaaatgttctcttatgctgaccagTGAGCAACAACCTCTGCGATTGAACCCCGCTGAGGTACAGGATGTTATTGCTGCAGTTTGCTCAGAGGCTTATTCCCCGAATACCAATGCTACTACAGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggttgaggtccccctatttcccttttctcacagtatcttttaatatggatcagTGAACAACAACCTTTGCGATTGAATCCTGTGGAGGTGCGTGAAGTCATTGCTGCAGTTTGCTCAGACACAGCTTCACCAAATACTAACCTCATGACGATG
agtatcttttaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gattgcttctgtgcttatgtaactgagaataaatcttcaatttgcatggttgaggtccccctatttcccttttctcacagtatcttttaatatggatcagTGAACAACAACCTTTGCGATTGAATCCTGTGGAGGTGCGTGAAGTCATTGCTGCAGTTTGCTCAGACACAGCTTCACCAAATACTAACCTCATGACGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- -tgcttct
- - - - - - gcttatg
- - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - -gcatggt