Sequence
atgc intronic sequence ATGC exonic sequence...ttaactggccatttttttttggaattataactgagtaatacaatttaccatttataacttattgacaatgaaagcttataaaaaattggttattgtttagGTTGGAGAAATACCTCAGGGCCTCCCAAAATTTTCTGTTCCTAAAAGTTTTGGGTATGCAAAGGATTTGATTCCGACTGCACTTCTTATTACTGGTGTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G52270.1 (Glycine max), 3'ss of exon 6
ttaactggccatttttttttg-gaattataactgagtaatacaatttaccatttataacttattgacaatgaaagcttataaaaaat--tggttattgtttagGTTGGAGAAATACCTCAGGGCCTCCCAAAATTTTCTGTTCCTAAAAGTTTTGGGTATGCAAAGGATTTGATTCCGACTGCACTTCTTATTACTGGTGTAG-
| | || | ||| | || ||| ||| ||| ||| | | | || |||| | | || || | | ||| ||| ||||| || |||||| ||||| |||||||| ||||| ||||||||||||||||| ||| ||||| ||||||| || || ||||| ||||| ||||| || |||||||| |
-tgaatgctcttttgtaaatgagaactatgtatgactaaggtcagtaat--ttactaacatgaagctgatagaa-ttaacaaataatactggtttttaattaggTGGGAGATATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGC
upper sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G10590.1 (Glycine max), 3'ss of exon 6
ttaactggccatttttttttggaattataactgagtaatacaatttaccatttat--aacttattgaca-atgaaagcttataaaaaat--tggttattgtttagGTTGGAGAAATACCTCAGGGCCTCCCAAAATTTTCTGTTCCTAAAAGTTTTGGGTATGCAAAGGATTTGATTCCGACTGCACTTCTTATTACTGGTGTAG
| | | | | | | || | || | | ||||| || | | || || | || || || | | | | | | ||| ||| ||||| || |||||| || || |||||||| ||||| ||||||||||||||||| ||| ||||| ||||||| || || ||||| ||||| ||||| || |||||||| |
--aggttgagaactatgtatg--acta-aggtcagtaactcactagaatgttgatgaagctgatagaaataatagaattaacaaataatactggtttttaattagGTGGGTGATATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGG
upper sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G13550.1 (Arabidopsis thaliana), 3'ss of exon 6
ttaactggccatttttttttggaattataactgagtaatacaatttaccatttataacttattgacaatgaaagcttataaaaaattggttattgtttagGTTGGAGAAATACCTCAGGGCCTCCCAAAATTTTCTGTTCCTAAAAGTTTTGGGTATGCAAAGGATTTGATTCCGACTGCACTTCTTATTACTGGTGTAG
| ||| || || || || | | | | | | | | || | | | ||| |||| | || | || |||| |||||||||||||||||||| |||| ||||||| | || | |||||||| ||||||| ||| |||| || || ||| ||||||||||| |
---gtcagaaattaaattc----atggtagttgccttgttgagctacataacggtgaagtgtttgaagtaatagc-----aaaattcagtatgttttcagGTGGGAGAAATACCTCAGGGCCTTCCAACATTTTCTTTCCCAAGAAGTTTTGATCATGCAAAAACGTTGCTTCCAACATCAGCTCTCATTACTGGTGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taccatttataacttattgacaatgaaagcttataaaaaattggttattgtttagGTTGGAGAAATACCTCAGGGCCTCCCAAAATTTTCTGTTCCTAAAAGTTTTGGGTATGCAAAGGATTTGATTCCGACTGCACTTCTTATTACTGGTGTAG
tattgac putative branch site (score: 2)
ttataaaaaattggtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaactggccatttttttttggaattataactgagtaatacaatttaccatttataacttattgacaatgaaagcttataaaaaattggttattgtttagGTTGGAGAAATACCTCAGGGCCTCCCAAAATTTTCTGTTCCTAAAAGTTTTGGGTATGCAAAGGATTTGATTCCGACTGCACTTCTTATTACTGGTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - ctggcca
- - - - - - - - - - - - - - - - - - aatacaa
- - - - - - - - - - - - - - - - - - - - - - - -ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat