Sequence
atgc intronic sequence ATGC exonic sequencegtgagtagcctgtgttttctgaaagatccttctgctaaattttgtcaacttggtttatagatggttaaaagtgtaacttgtcctcttatttctttttgtgatgaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATGTTCTCTTGATTGGTGTACCGCCAGTTGTATGTCAATTTTTTCTATACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G126435_T01 (Zea mays), 3'ss of exon 12
gtgagtagcctgtgttttctgaaagatccttctgctaaattttgtcaacttggttt-atagatggttaaaagtgtaacttgtcctcttatttctttttgtgatgaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATGTTCTCTTGATTGG-TGTACCGCCAGTTGTATGTCAATTTTTTCTATACAA
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-----------atatccttttatc-atgttcctgttaaacttctttgcaccgatttgattagcaactggatatctgattgagggggtttacgcttgctggtgt-atcttgcagCCACATCCTGATGTGAAGCCGATGGCATATGCAAATAACTTCCTCAGGATGTTTCAATGACGGAATATAACAACA-TTGTTTAGCAATTTTTATCAGATGA
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G126435_T02 (Zea mays), 3'ss of exon 11
gtgagtagcctgtgttttctgaaag-atccttctgctaaattttgtcaacttggttt-atagatggttaaaagtgtaacttgtcctcttatttctttttgtgatgaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATGTTCTCTTGATTGG-TGTACCGCCAGTTGTATGTCAATTTTTTCTATACAA
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gttggctctttgaatatccttttatcatgttcctgttaaacttctttgcaccgatttgattagcaactggatatctgattgagggggtttacgcttgctgGTGT-ATCTTGCAGCCACATCCTGATGTGAAGCCGATGGCATATGCAAATAACTTCCTCAGGATGTTTCAATGACGGAATATAACAACA-TTGTTTAGCAAT-------------
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G12440.1 (Glycine max), 3'ss of exon 12
----------------------------------------------------------gtgagtagcctgtgttttctgaaa-gatccttctgctaaattttgtcaacttggtttatagatggttaaaagtg--taacttg---tcctcttatttctttt--tgtgatgaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATGTTCTCTTGATTGGTGTACC--GCCAGTTGTATGTCAATTTTTTCTATACAA
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tggttagtaccttttatgtttggagtatgctatgttatatcatgttttgtcatcctcaaaaaattaccaatatgttctttattgatttcatttatgaccgtgcatatctttcaatctgtattgttatatggggttgacatactttccttgtgtctggtttactttgttgaatatgcagcCACACCCTGATGTCAAACCTATGGCTTATGCAAACAACTTCCTCCGGATGTTCTCATAATTTATACAGCTGACTAGAAGAAGCCCAGAACTGCCAATGGC-
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G42380.1 (Glycine max), 3'ss of exon 12
gtgagtagcctgtgttttctgaaagatccttctgctaaattttgtcaacttggtttatagatggttaaaagtgtaacttgtcctcttatttctttttgtgatgaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATGTTCTCTTGATTGGTGTACCGCCAGTTGTATGTCAATTTTTTCTATACAA--
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--------aacaaattttctggtgcattatgactgcatatctt-tcaatctgtgttatatagggttgacattctttccttgtgtctggtttatttt---gttgaatatgcagCCACACCCTGATGTCAAACCTATGGCATATGCAAACAACTTCCTCCGGATGTTCTCATAATT--TATACAGCTGACTAGAAGCCTAGAACTGCCAATTGTTA
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G42810.2 (Arabidopsis thaliana), 3'ss of exon 13
gtgagtagcctgtgttttctgaaagatccttctgctaaattttgt---caacttggtttatagat-ggttaaaa---gtgtaacttgtcctcttatttctttttgtgatgaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATGTTCTCTTGATTGGTGTACCGCCAGTTGTATGTCAATTTTTTCTATACAA
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gtgagtgtagtcc-tcttacatagcattgttcttatgaatgtttcacagaagatagttcacggtttgatttagactcattcaaacactcttctaattttctgatattgttatttcccagCCTCATCCGGATGTGAAGCCTATGGCATATGCAAACAACTTTCTCAGGATGTTCAACTAACCAGCAAAAAGCTTCTTCTACTCAAAATGCTATTCTAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110380672|gb|EC945956.1|EC945956EST: GTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTG CCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATG
genomic: GTTTTGAAGCCCCAGATCTGAAGCCAAACATTGTCACATTTTCAGCAGTGgtgagtagcc ... gaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagatggttaaaagtgtaacttgtcctcttatttctttttgtgatgaaattgcagCCACACCCTGATGTGAAGCCAATGGCGTATGCCAATAACTTTCTCCGGATGTTCTCTTGATTGGTGTACCGCCAGTTGTATGTCAATTTTTTCTATACAA
gtgtaac putative branch site (score: 3)
tcttatttcttttt TA-rich tract