Sequence
atgc intronic sequence ATGC exonic sequencegtaattataaaatagaacttgaatgtttttccgcaatcatcgcttgtaacaagcttagaaggatccaggaaaacaaagaaaaaaaaaattaatcccaacatatgtactcttaaaagatttgtttttaatacatacttgttttatttccagATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G32050.1 (Glycine max), 3'ss of exon 7
gtaattataaaatagaacttgaatgtttttccgcaatcatcgcttgtaacaagcttagaaggatccaggaaaacaaagaaaaaaaaaattaatcccaacatatgtactcttaaaagatttgtttttaatacatacttgttttatttccagATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGG
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---------------------------------------------gtattgtatttcattgaatatctattcttatatgaaaaatatgtgcaacatagtacatagaattt------gttgacatccattatctttttgttatatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAGCACGGTGACGGAACTTGGGCAGTAG
upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G38430.1 (Glycine max), 3'ss of exon 7
gtaattataaaatagaacttgaatgtttttccgcaatcatcgcttgtaacaagcttag--aaggatccaggaaaacaaagaaaaaaaaaattaatcccaacatatgtactcttaaaagatttgtttttaatacatacttgttttatttccagATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGG
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-----------------------------------------gtatatattgtgttttattgaatatccattctttttaaatgaaagatagtgcaacttagtacatattatttgctga---tgacatccattatgttgttattatg----cagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTGAGGTATTGTAAGCAGCACGGTGACGGGACTTGGGCAGTAG
upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G10710.1 (Glycine max), 3'ss of exon 7
gtaattataaaatagaacttgaatgtttttccgcaatcatcgcttgtaacaagcttagaaggatccaggaaaacaaagaaaaaaaaaattaatcccaacatatgtactcttaaaagatttgtttttaatacatacttgttttatttccagATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGG
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-------------------------------------cgcgggttgaacccctccta-------ctagtaaaactaacattttaataactaacatttgtaaaaaa-----taaaaaaaatacaaatga-acctattgtttgtttctgcagATGACAGCAGAACTACAACTACCTACACCACTTGTGCCAACTCGCGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGCAGATGGGACTTGGGCAGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caacatatgtactcttaaaagatttgtttttaatacatacttgttttatttccagATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGG
ttttaat putative branch site (score: 3)
cttgttttatttcc putative PPT
ttaaaagatttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattataaaatagaacttgaatgtttttccgcaatcatcgcttgtaacaagcttagaaggatccaggaaaacaaagaaaaaaaaaattaatcccaacatatgtactcttaaaagatttgtttttaatacatacttgttttatttccagATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA