1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgatctgcatcgacataatttgttctcatagttggttttgtggcttggtatttgatgcatctctgtaggtttgaggaaagtagataaactattagctccactcttacctaattattttctcatgctacagGTTGAGGCCAAGGGAGGTTTAGTGAAGAAACTTTTCAACATTGGATATAAGCGGCGACTGGCAGCTGTAGAAGGAAGTTGTTTTGGAGCTTGGGGACTGG
species | Vitis vinifera |
transcript | Vv12s0057g01270.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAACAGTTCCAGCTATTTTAGATCGTGTTCGAGATGGAGTTCTGAAACAG GTTGAGGCCAAGGGAGGTTTAGTGAAGAAACTTTTCAACATTGGATATAAGEST: gi|110720661|gb|EE096778.1|EE096778
genomic: CAACAGTTCCAGCTATTTTAGATCGTGTTCGAGATGGAGTTCTGAAACAGgtttgatctg ... catgctacagGTTGAGGCCAAGGGAGGTTTAGTGAAGAAACTTTTCAACATTGGATATAAG
EST: CAACAGTTCCAGCTATTTTAGATCGTGTTCGAGATGGAGTTCTGAAACAG GTTGAGGCCAAGGGAGGTTTAGTGAAGAAACTTTTCAACATTGGATATAAG
genomic: CAACAGTTCCAGCTATTTTAGATCGTGTTCGAGATGGAGTTCTGAAACAGgtttgatctg ... catgctacagGTTGAGGCCAAGGGAGGTTTAGTGAAGAAACTTTTCAACATTGGATATAAG
gaaagtagataaactattagctccactcttacctaattattttctcatgctacagGTTGAGGCCAAGGGAGGTTTAGTGAAGAAACTTTTCAACATTGGATATAAGCGGCGACTGGCAGCTGTAGAAGGAAGTTGTTTTGGAGCTTGGGGACTGG
acctaat putative branch site (score: 3)
ttattttctc CT-rich tract
ttacctaattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatctgcatcgacataatttgttctcatagttggttttgtggcttggtatttgatgcatctctgtaggtttgaggaaagtagataaactattagctccactcttacctaattattttctcatgctacagGTTGAGGCCAAGGGAGGTTTAGTGAAGAAACTTTTCAACATTGGATATAAGCGGCGACTGGCAGCTGTAGAAGGAAGTTGTTTTGGAGCTTGGGGACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT