Sequence
atgc intronic sequence ATGC exonic sequencegtaagttaccagaaccaagtgcataatacttacataaatttagcaaatctttggcacgatattcacttacagtctctttgcagGTATGACAAAGGTTCTTGGCTTCTTCCCTTATCACTGGTTCCATTCTTGGGTCCTGCTTTGTATCTTCTCCTCCGGCCATCATTGTCTGCAATGCCTGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g01260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G07300.1 (Glycine max), 3'ss of exon 6
----------------gtaagttaccagaaccaagtgcataata---ctta--cataaatttagcaaa---tctttggcacgatattcacttacagtctctt-tgcagGTATGACAAAGGTTCTTGGCTTCTTCCCTTATCACTGGTTCCATTCTTGGGTCCTGCTTTGTATCTTCTCCTCCGGCCATCATTGTCTGCAATGCCTGTT
|||||| | | || | || | | || | || | || ||| ||| | | | || | | | || | ||||||| ||||||||||||||||||||||||| ||||| || | ||||| || || |||| ||| || |||||||| ||||||||||| || || || | ||
gtatgctccttgccatataagtttttatttcactgtttacaacagatcctagtcctagttatataaaacaatctatagaatatattttaatgctaatccaatatgcagGTCTGACAAAGGTTCTTGGCTTCTTCCCCTATCATTGATACCATTTTTAGGGCCTGGTTTATACCTTCTCCTACGGCCATCATTATCAACAGTGGCCATT
upper sequence: Vv12s0057g01260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G11710.1 (Glycine max), 3'ss of exon 5
----------------------gtaagttaccagaaccaagtgcata---atacttacataaatttagcaaatc----tttggcacgatattcacttacagtctc-tttgcagGTATGACAAAGGTTCTTGGCTTCTTCCCTTATCACTGGTTCCATTCTTGGGTCCTGCTTTGTATCTTCTCCTCCGGCCATCATTGTCTGCAATGCCTGTT
|||||| | | | || | | | || | || |||| | | ||| || | | ||| | ||||||| |||||||||||||||||| |||||| ||||| || | ||||| || || |||| ||| || |||||||| ||||||||||| || || || | ||
gtatgctccttgccatattcatataagtttttattccaatgtttacacagaccctagtcctagttatataaatgacaatctagcatatattttaatgctagttcaatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGGGCCTGGTTTATACCTTCTCCTGCGGCCATCATTATCAACAGTGGCCATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110378612|gb|EC943752.1|EC943752EST: TCTGCATTCGCTCCTTTCTGGGTGTACAATGATATGACTGCTCGAAAATG GTATGACAAAGGTTCTTGGCTTCTTCCCTTATCACTGGTTCCATTCTTGGG
genomic: TCTGCATTCGCTCCTTTCTGGGTGTACAATGATATGACTGCTCGAAAATGgtaagttacc ... ctctttgcagGTATGACAAAGGTTCTTGGCTTCTTCCCTTATCACTGGTTCCATTCTTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttacataaatttagcaaatctttggcacgatattcacttacagtctctttgcagGTATGACAAAGGTTCTTGGCTTCTTCCCTTATCACTGGTTCCATTCTTGGGTCCTGCTTTGTATCTTCTCCTCCGGCCATCATTGTCTGCAATGCCTGTT
tctctttgc CT-rich tract
ataaatttagcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttaccagaaccaagtgcataatacttacataaatttagcaaatctttggcacgatattcacttacagtctctttgcagGTATGACAAAGGTTCTTGGCTTCTTCCCTTATCACTGGTTCCATTCTTGGGTCCTGCTTTGTATCTTCTCCTCCGGCCATCATTGTCTGCAATGCCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC