Sequence
atgc intronic sequence ATGC exonic sequence...gtcaattttttatgtaatcacttacctctggacttcagtgcttattgtgtttagtttttctttttgtatatggcattgaaaaatattgtgagttttgcagTTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G40290.1 (Glycine max), 3'ss of exon 2
gtcaattttttatgtaatca---cttacctctggacttcagtgcttattgtgtttagtt---tttctttttgtatatggcattgaaaaat-attgtg--agttttgcagTTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAG
|| | | | ||| || | ||| | || | || || | || | || |||| || || | | ||| | || ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
gtgagtcatccatgatattagattctactttgggggatggactgctactgctacccatcccattcccattaccatatagctttagacttttgctgttttatgttggcagTTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAG
upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G00490.2 (Glycine max), 3'ss of exon 2
gtcaattttttatgtaatcacttacctctggacttcagtgcttattgtgtttagtttttctttttgtatatggcattgaaaaatattgtgagttttgcagTTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAG---------------------------------
|| | | | || | || | | ||| | ||| ||| |||| | | ||| | | | || | || | ||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||
gtgactcatccatcttattagctctttctattttggcagtcttgctgtttttacatatagctttagacttttgc---------tgttttatgttgc-cagTCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAA
upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 3'ss of exon 5
---------gtcaattttttatgtaatcacttacctctggacttcagtgcttattgtgtttagtttttctttttgtatatggcattgaaaaatattgtgagttttgcagTTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAG
|| | || | || | | | | | | | | || || | || |||||| || || ||| | | | ||||||||| |||||||||||||||||||||||||| |||||||||||||| || || || |||||||||
gtaattgaagttagttgccagtatattagtt--cttaacaatgactggattggaagtagttgctattatattttgttcatttttttttt---tatctctaatacttcagTTTTGACGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAAAATATCCGACAGGAACGCAAAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgtttagtttttctttttgtatatggcattgaaaaatattgtgagttttgcagTTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAG
ttagtttttctttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcaattttttatgtaatcacttacctctggacttcagtgcttattgtgtttagtttttctttttgtatatggcattgaaaaatattgtgagttttgcagTTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - -ctctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata