1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attttaatgttcttacatcatgaatgcattctaccattttgctttccagtttagctccttgattgtttaatccttcctgatcatagttttctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACACACATCTTGCTTCAAACACTTTCCTGGTGGGGCATTCTGTCACCCTGG
species | Vitis vinifera |
transcript | Vv12s0035g01130.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110372574|gb|EC936754.1|EC936754
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: GGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|161712238|gb|FC061612.1|FC061612
genomic: GGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110368464|gb|EC932441.1|EC932441
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|161719271|gb|FC068941.1|FC068941
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110727170|gb|EE103626.1|EE103626
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTANGTGCTTTGAACEST: gi|351042107|gb|FQ456317.1|FQ456317
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110727691|gb|EE104738.1|EE104738
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|351017433|gb|FQ435786.1|FQ435786
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110381916|gb|EC937999.1|EC937999
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|37183980|gb|CF603334.1|CF603334
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|37183445|gb|CF602799.1|CF602799
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|351028342|gb|FQ427238.1|FQ427238
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110374475|gb|EC939254.1|EC939254
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110381825|gb|EC935490.1|EC935490
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110699423|gb|EE076408.1|EE076408
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|110392524|gb|EC958004.1|EC958004
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|351025275|gb|FQ434288.1|FQ434288
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|71855580|gb|DT004635.1|DT004635
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|71859460|gb|DT008515.1|DT008515
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|71858356|gb|DT007411.1|DT007411
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|294965707|gb|GW839162.1|GW839162
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TGGGCATTGGTTTAGACCAAGGATGGGACCGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTEST: gi|34544508|gb|CF512740.1|CF512740
genomic: TGGGCATTGGTTTAGACCAAGGATTGGAC-GTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATT
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|351027331|gb|FQ444580.1|FQ444580
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|161714380|gb|FC063221.1|FC063221
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|351016802|gb|FQ424229.1|FQ424229
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACEST: gi|352794288|gb|FQ479530.1|FQ479530
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
EST: TTGGGCATTGGTTTAGACCAAGGATGGGACGTGCTGTATACCTTCCACCG TTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
genomic: TTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtccat ... ctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAAC
ccagtttagctccttgattgtttaatccttcctgatcatagttttctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACACACATCTTGCTTCAAACACTTTCCTGGTGGGGCATTCTGTCACCCTGG
tcctgat putative branch site (score: 3)
ttttctgt putative PPT
attgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttaatgttcttacatcatgaatgcattctaccattttgctttccagtttagctccttgattgtttaatccttcctgatcatagttttctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACACACATCTTGCTTCAAACACTTTCCTGGTGGGGCATTCTGTCACCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - -tctacca
- - - - - - - - - - - - - - - - - - - - gctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttg