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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtagtagatgggatcacttctggtgttgattatttttctttagaatttttgacttaaggctaattcttttgtacagGAAAAGTCATATTATGCATTAGCGGCATTTTGTGAGAATATGGGTGAGGAGATCCTTCCTTTTCTTGATCCTTTGATGGGGAAACTACTTGCAGCCCTCC

Basic information

species Vitis vinifera
transcript Vv12s0034g02160.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 6
--------------------------------------gtatgt-gtagtagatgggatcacttctggtgttgattatttttctttagaat-ttttgacttaaggctaattct---tttgtacagGAAAAGTCATATTATGCATTAGCGGCATTTTGTGAGAATATGGGTGAGGAGATCCTTCCTTTTCTTGATCCTTTGATGGGGAAACTACTTGCAGCCCTCC
                                      | ||||     ||||||  |  ||    | |    ||||  |   ||       | ||| || |    ||  | |   ||  | ||||| |||||||||||||| || || || ||||| ||||| |||||||| || |||||||||||  | ||||||||||||   | |||  |  |||| ||||
gtaagcattggagaagagagtggcctatcaatacaaaagaatgttaccttagatgctactaccaaagctaaaaattaaatagattgcctgcatgttgtctaagcattagatttatattcatgcagGAGAAGTCATATTATGCGTTGGCTGCTTTTTGCGAGAACATGGGTGAAGACATCCTTCCTTTCTTAGATCCTTTGATGAAAAGACTGTTGACAGCTCTCC

upper sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 6
-----------------------------------gtatgtgtagtagatgggatc-acttctggtgttgattattt------ttctttagaatttttgacttaaggctaattct---tttgtacagGAAAAGTCATATTATGCATTAGCGGCATTTTGTGAGAATATGGGTGAGGAGATCCTTCCTTTTCTTGATCCTTTGATGGGGAAACTACTTGCAGCCCTCC
                                     | |  || ||  |  || | ||| |      | | ||||       || | |  |  | ||| || |    ||  | |   ||  | ||||| |||||||| ||||| || || || ||||| ||||| |||||||| || |||||||||||  | |||||||||||||| | |||  |  |||| ||||
gtacacactggagaagagaaaggcttgtcaatacaaaaagaatattaccttagagctactaccaaaactaaatattaaatagattgtctgca--tgttgtctaagcattagatttatattcatgcagGAGAAGTCATACTATGCGTTGGCTGCTTTTTGCGAGAACATGGGTGAAGACATCCTTCCTTTCTTAGATCCTTTGATGGGAAGACTGTTGACAGCTCTCC

upper sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G27640.1 (Arabidopsis thaliana), 3'ss of exon 6
-------------------------------gtatgtgtagtagatgggatcacttctgg-tgttgattatttttctttagaatttttgacttaaggctaattcttttgtacagGAAAAGTCATATTATGCATTAGCGGCATTTTGTGAGAATATGGGTGAGGAGATCCTTCCTTTTCTTGATCCTTTGATGGGGAAACTACTTGCAGCCCTCC
                                | ||| |  |   ||  |  ||  ||   ||  ||||||    | ||||  | || |    |   || ||| || | |||||||||||||| | ||||| ||||| ||||| |||||||| ||||| ||||| ||  ||||  | ||||||| ||| |||||||| ||  | ||||||||  
gtaaaatttaaagaaaccaattgagtgtggtttgtgtcttctttttgaaaatacacctttctgccgattatca--ccttaggttattagtaacatttcttattattgtctacagGAAAAGTCACACTATGCTTTAGCAGCATTCTGTGAGAACATGGGAGAGGAAATTGTTCCGCTGCTTGATCATTTAATGGGGAAGCTTATGGCAGCCCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgttgattatttttctttagaatttttgacttaaggctaattcttttgtacagGAAAAGTCATATTATGCATTAGCGGCATTTTGTGAGAATATGGGTGAGGAGATCCTTCCTTTTCTTGATCCTTTGATGGGGAAACTACTTGCAGCCCTCC
                                    ggctaat  putative branch site (score: 3)
                                          ttcttttgt  CT-rich tract
       attatttttctttaga  TA-rich tract