1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcatttttgcttaattcattttgctcgccttttacctgtgaaaagccagacttaacattctttatttcttcatgctatgcagGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCATTGTCGCCTGAGTCAGCTCGCATACTG
species | Vitis vinifera |
transcript | Vv12s0034g01000.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAG GTGTGGTGGAGCTTGTTTCGGATTTTGTCGTTTGTGAAGAGGGAACACCATEST: gi|83274500|gb|DV938597.1|DV938597
genomic: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAGgtgcattttt ... tgctatgcagGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCAT
EST: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAG GTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCATEST: gi|110372678|gb|EC936863.1|EC936863
genomic: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAGgtgcattttt ... tgctatgcagGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCAT
EST: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAG GTGTGGTGGAGCTTGTTTCGGATTTTGTCGTTTGTGAAGAGGGAACACCATEST: gi|71868915|gb|DT017970.1|DT017970
genomic: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAGgtgcattttt ... tgctatgcagGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCAT
EST: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAG GTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCATEST: gi|110361718|gb|EC925211.1|EC925211
genomic: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAGgtgcattttt ... tgctatgcagGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCAT
EST: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAG GTGTGGTGGAGCTTGTTTCGGATTTTGTCGTTTGTGAAGAGGGAACACCAT
genomic: GATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAGgtgcattttt ... tgctatgcagGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCAT
ccttttacctgtgaaaagccagacttaacattctttatttcttcatgctatgcagGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCATTGTCGCCTGAGTCAGCTCGCATACTG
acttaac putative branch site (score: 3)
ttctttatttcttcat CT-rich tract
ttaacattctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatttttgcttaattcattttgctcgccttttacctgtgaaaagccagacttaacattctttatttcttcatgctatgcagGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCATTGTCGCCTGAGTCAGCTCGCATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC