Sequence
atgc intronic sequence ATGC exonic sequence...gtgtccaatgctaacctcactaggatttattgctctatagtgtcctcttctgaattgttaaggactgtttattttattttttttgcatttactgttacagAGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTTGCTTTTCACATGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G13410.1 (Glycine max), 3'ss of exon 6
---gtgtccaatgctaacctcactaggatttattgctctatagtgtcctcttctgaattgttaaggactgtttattttattttttttgcatttactgttacagAGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTTGCTTTTCACATGAAG
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tttgtgttgagtggtgataactgttaactttttaaatttatttgattgtttcc--agttcctgtttaatttgaaaactgctgccttttt-tgtacttttacagAGTGAAGAGGCTCCCATAGATGATCTCATGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAG
upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 6
gtgtccaatgctaacctcactaggatttattgctctatagtgtcctcttctgaattgttaaggactgtttattttattttttttgcatttactgttacagAGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTTGCTTTTCACATGAAG
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ttgtgtagagtggtgttaacttttaacttttcatatttatctgattgtttccagtttctgttaaatttgaaaattgcttctttttttggtacttttacagAGTGAAGAGGCCCCCATAGATGATCTCATGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAG
upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgtccaatgctaacctcactaggattt-----attgctctatagtgtcctcttctgaattgttaaggactgtttattttattt-tttttgcatttactgttacagAGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTTGCTTTTCACATGAAG
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--tctgaattctga--tggttggagttttgaggaatgactaaatgtgtcttattc--aatgagaaaggtcactgagtcatatttatctacctgttcattatctcagAGTGAGGAGGCCTCTATTGACGATTTAATGGAGCTTGTGCAACAAATTGTTGCTTTTCACATGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110730294|gb|EE107210.1|EE107210EST: GAACTTAGCTGGAGAAATTTCACAGGAGTATGCAAAGAGGCAG AGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTT
genomic: GAACTTAGCTGGAGAAATTTCACAGGAGTATGCAAAGAGGCAGgttaggcaat ... actgttacagAGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttctgaattgttaaggactgtttattttattttttttgcatttactgttacagAGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTTGCTTTTCACATGAAG
tttattttattttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtccaatgctaacctcactaggatttattgctctatagtgtcctcttctgaattgttaaggactgtttattttattttttttgcatttactgttacagAGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTTGCTTTTCACATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - ccaatgc
- - - - - - -acctcac
- - - - - - - - - - - - - - - - - - - - - -cctcttc