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gtaatagatgctgattggggtgtttcctctgttgataaactgatctccaacatcttgaatttttgtggggatagaagaaatgggctatttataccaagatctgtatgtgattgatgctgtttcaattttcttctcttatcagATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCTATCACACCAAACCAGCCTGAAGTTCTATTGCTTGATTACCCTAGTCATC
species | Vitis vinifera |
transcript | Vv12s0028g02660.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGACATCAGGTCGTGTTACCATTGCAACCAGTGCGGTTTACTCATCAAAG ATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCTEST: gi|161715434|gb|FC069034.1|FC069034
genomic: TGACATCAGGTCGTGTTACCATTGCAACCAGTGCGGTTTACTCATCAAAGgtaatagatg ... ctcttatcagATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCT
EST: TGACATCAGGTCGTGTTACCATTGCAACCAGTGCGGTTTACTCATCAAAG ATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCTEST: gi|71854693|gb|DT003748.1|DT003748
genomic: TGACATCAGGTCGTGTTACCATTGCAACCAGTGCGGTTTACTCATCAAAGgtaatagatg ... ctcttatcagATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCT
EST: TGACATCAGGTCGTGTTACCATTGCAACCAGTGCGGTTTACTCATCAAAG ATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCT
genomic: TGACATCAGGTCGTGTTACCATTGCAACCAGTGCGGTTTACTCATCAAAGgtaatagatg ... ctcttatcagATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCT
tttataccaagatctgtatgtgattgatgctgtttcaattttcttctcttatcagATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCTATCACACCAAACCAGCCTGAAGTTCTATTGCTTGATTACCCTAGTCATC
gattgat putative branch site (score: 4)
ctgtttcaattttctt CT-rich tract
tttcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagatgctgattggggtgtttcctctgttgataaactgatctccaacatcttgaatttttgtggggatagaagaaatgggctatttataccaagatctgtatgtgattgatgctgtttcaattttcttctcttatcagATGAGTTTAGCAATTGCCATAAGGTACTCTTTAACAAGGCGGGCCTTTTCTATCACACCAAACCAGCCTGAAGTTCTATTGCTTGATTACCCTAGTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG