Sequence
atgc intronic sequence ATGC exonic sequencegttttccatcacaacactagatttcaatagcctgctaaatatatatatttcttaatagtcaatagatgacttagtatatacaaaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G14620.1 (Glycine max), 3'ss of exon 6
gttttccatcacaacactagatttcaatagcctgctaaatatatatatttcttaatagtcaatagatgacttagtatatacaaaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGAT
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---ggttattatgggcataaaaa-caatttctttgacaccacttttacatttttagacctagttattgattacttacacttgaatt-caGGTTGGAGGGGCTTGCGCATAAGGTGCTTCAGTGGTACTTATGCAGAATGGAGGGCTGGTTTGCTGCAGATTCTGATACTATTTCACTGAAAGGATGGGA-
upper sequence: Vv12s0028g01120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G03610.2 (Glycine max), 3'ss of exon 6
--gttttccatcacaacactagatttcaatagcc--tgctaaatatatatatttcttaatagtcaatagatgacttagtatatacaaaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGAT
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gtgattattggcataaaataatcctttgatcaccattattgattttcttagagctgaagtaatgtataatttaactt-tctctgttggatgcagGTTGGAAGGGCTTTCCCACAAGGTGCTACAGTGGTATTTATGCAGAATGGAAGGTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGAT
upper sequence: Vv12s0028g01120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G45140.1 (Glycine max), 3'ss of exon 6
--gttttccatcacaacactagatttcaatagcc--tgctaaatatatatatttcttaatagtcaatagatgacttagtatatacaaaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGAT
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gtgattattggcataaaattatcctttgaccacctttattgattttcttggagctgaagtaatgtataatttaactt-tctctgttggatgcagGTTAGAAGGGCTTTCCCACAAGGTGCTACAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGAT
upper sequence: Vv12s0028g01120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G41570.3 (Glycine max), 3'ss of exon 6
--gttttccatcacaacactagatttcaat---agcctgctaaatatatatatttcttaatagtcaatagatgacttagtatatacaaaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGAT
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gttattatgggcataagaattaatttccatgacaacattttggttttttagaccttgtaattgataa--gattattt--caattcttgaatccagGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGAC
upper sequence: Vv12s0028g01120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G59050.1 (Arabidopsis thaliana), 3'ss of exon 5
gttttccatcacaacactagatttcaata-gcctgctaaatatatatatttcttaatagtcaatagatgacttagtatataca-aaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGAT
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gtatggaaacatattgtctcaactcattccgttgatttgttacttatccgcttttatatttgttgcatgcttaattagattttcacttatagGTTGGAGGGACTTGCCCATAATGTGCTTCAGTGGTACTTGTGCCGCATGGAAGGATGGTTTGCTGCTGATGCTGAAACCATCTCGGCAAAGTGTTGGGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110698188|gb|EE075460.1|EE075460EST: CCCATCCTAGATGCATTCAAAATTGTTTTTGAAAGGAGGCCAGATTTAAG GCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGA
genomic: CCCATCCTAGATGCATTCAAAATTGTTTTTGAAAGGAGGCCAGATTTAAGgttttccatc ... caaaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaatatatatatttcttaatagtcaatagatgacttagtatatacaaaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGAT
atatatatttcttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttccatcacaacactagatttcaatagcctgctaaatatatatatttcttaatagtcaatagatgacttagtatatacaaaatgcagGCTGGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT