1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttacccgcatttttcctggatttgataaatatgcctgagatctttttgttttttaacatatctagatttggtgaatgaacataagtccttattgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCACTGGCTTCAAACCAAGTCAATTACAGCCTTTTATACAGGCTTCCAGAGGA
species | Vitis vinifera |
transcript | Vv12s0028g01100.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTG AAAAGCGTCTCCGTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCACEST: gi|110730925|gb|EE108561.1|EE108561
genomic: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTGgtacgtatct ... attgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCAC
EST: TGCAATGGAGATGGGCCTTGTGAAGGCTGTANGAGTTTCTAACTACAGTG AAAA-CGTCTCCTTGAGGCTTATGAGA-GCTTAAGAAGAAAG-TATCCCACEST: gi|110381894|gb|EC937946.1|EC937946
genomic: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTGgtacgtatct ... attgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCAC
EST: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTG AAAAGCGTCTCCGTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCACEST: gi|26263992|gb|CA815055.1|CA815055
genomic: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTGgtacgtatct ... attgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCAC
EST: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGAG AAAAGCGTCTCCGTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCACEST: gi|110720549|gb|EE096568.1|EE096568
genomic: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTGgtacgtatct ... attgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCAC
EST: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTANGAGTTTCTAACTACAGTG AAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCACEST: gi|110370834|gb|EC934386.1|EC934386
genomic: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTGgtacgtatct ... attgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCAC
EST: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTG AAAAGCGTCTCCGTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCAC
genomic: TGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTGgtacgtatct ... attgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCAC
ttgttttttaacatatctagatttggtgaatgaacataagtccttattgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCACTGGCTTCAAACCAAGTCAATTACAGCCTTTTATACAGGCTTCCAGAGGA
ttttaac putative branch site (score: 2)
tccttatt putative PPT
ttttaacatatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacccgcatttttcctggatttgataaatatgcctgagatctttttgttttttaacatatctagatttggtgaatgaacataagtccttattgttttagAAAAGCGTCTCCTTGAGGCTTATGAGAAGCTTAAGAAGAGAGGTATCCCACTGGCTTCAAACCAAGTCAATTACAGCCTTTTATACAGGCTTCCAGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
-tacccgc
- - - - - - ttcctgg
- - - - - - - - - - - - ataaata
- - - - - - - - - - - - - - - -tgcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataa