Sequence
atgc intronic sequence ATGC exonic sequencegtattttccttgaaccttgcatgtgatggaactggccttttctatcaatattgtacttatactgctttgttttttctatggctgtagCATCAGAACTGCCCGGGTTAACGGCTGGCTTTGGCCTCCTTGCATGGTTTGGTGTCTTCCTTGCAAGTGCTGGATTAGTTATGTTTTACAAATGTAGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G11600.1 (Glycine max), 3'ss of exon 6
-----------------------------------gtattttccttgaaccttgcatgtgatggaactggccttttctatcaatattgtacttatactgctttgtttt--ttctatggctgtagCATCAGAACTGCCCGGGTTAACGGCTGGCTTTGGCCTCCTTGCATGGTTTGGTGTCTTCCTTGCAAGTGCTGGATTAGTTATGTTTTACAAATGTAGCAA
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gtatctatcttggcttccacatatgaaatcaatacgtgtgcatgtgagcacttgcatgcat---aattatccttttattttgatggttgtctcactatcatttgtatcaatttttttattgcagCAACAAAAATGCCAAAGCTGACAGCTGCAGCTGGCCTTCTTGCATGGTTTGGAGTTTTTCTTGCAAGTGTTGGTTTGGTGATGTTTTACAGGTGTAGCAG
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 7
---------------------------------gtattttcct-tgaac-cttgcatgtgatggaactggccttttctatcaatattgtacttatactgctttgtttttt---ctatgg-ctgtagCATCAGAACTGCCCGGGTTAACGGCTGGCTTTGGCCTCCTTGCATGGTTTGGTGTCTTCCTTGCAAGTGCTGGATTAGTTATGTTTTACAAATGTAGCAA
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gtatctatcttaccttccacatatggaatcaatatgtgtgcatgtgagcacttgcat-tcat--aattatccttttactttgatggttgtctcactatcatttgtatcttaatttattttctgcagCAACAAAAATGCCAAAGATGACAGCTGCAGCAGGCCTTCTTGCATGGTTTGGAGTTTTACTTGCAAGTGTTGGTTTGGTGATGTTTTACAGGTGTAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggccttttctatcaatattgtacttatactgctttgttttttctatggctgtagCATCAGAACTGCCCGGGTTAACGGCTGGCTTTGGCCTCCTTGCATGGTTTGGTGTCTTCCTTGCAAGTGCTGGATTAGTTATGTTTTACAAATGTAGCAA
ctttgttttttctat CT-rich tract
ttttctatcaatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattttccttgaaccttgcatgtgatggaactggccttttctatcaatattgtacttatactgctttgttttttctatggctgtagCATCAGAACTGCCCGGGTTAACGGCTGGCTTTGGCCTCCTTGCATGGTTTGGTGTCTTCCTTGCAAGTGCTGGATTAGTTATGTTTTACAAATGTAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA