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...gtgactttatttggttggaaattaattagtgaacttgtaaattttcaaattttcctactctgtccaagaaatggagaagaattttttccaatttgtgcagGAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTATATGGGAAGAGGTTTGTTGGTCCTCTCACACCTACAGTATTGTCTTTGAG
species | Vitis vinifera |
transcript | Vv11s0065g00640.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCATCCAG GAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTATEST: gi|30299627|gb|CB976421.1|CB976421
genomic: TCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCATCCAGgttgcttctc ... atttgtgcagGAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTAT
EST: TCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCGTCCAG GAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTATEST: gi|161719373|gb|FC064852.1|FC064852
genomic: TCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCATCCAGgttgcttctc ... atttgtgcagGAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTAT
EST: TCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCATCCAG GAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTAT
genomic: TCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCATCCAGgttgcttctc ... atttgtgcagGAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTAT
caaattttcctactctgtccaagaaatggagaagaattttttccaatttgtgcagGAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTATATGGGAAGAGGTTTGTTGGTCCTCTCACACCTACAGTATTGTCTTTGAG
aattttttccaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactttatttggttggaaattaattagtgaacttgtaaattttcaaattttcctactctgtccaagaaatggagaagaattttttccaatttgtgcagGAAGGATGTGGTGTCACTGCAGGATGGTTTATTTGCCTATGTCATACTTATATGGGAAGAGGTTTGTTGGTCCTCTCACACCTACAGTATTGTCTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - -tggttgg
- - - - - - - - - aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagaa