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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggttttttgatcatgttttccattaatttctctagcagataatgtggtatacatttttgagattctaacatattattttctgacttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG

Basic information

species Vitis vinifera
transcript Vv11s0065g00450.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87584845|gb|DY473849.1|DY473849
EST:     ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG                         GAGCCAAAGGCTGAAGGTGATTCACAGTTATGCAACTCAGTGAACTACCAC
genomic: ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAGgttaggtttt ... ttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC
EST: gi|110395278|gb|EC960936.1|EC960936
EST:     ACA-TTTAAATTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG                         GAGCCAAAGGCTGAAGGTGATTCACAGTTATGCAACTCAGTGAACTACCAC
genomic: ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAGgttaggtttt ... ttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC
EST: gi|33405732|gb|CF211359.1|CF211359
EST:     ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG                         GAGCCAAAGGCTGAAGGTGATTCACAGTTATGCAACTCAGTGAACTACCAC
genomic: ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAGgttaggtttt ... ttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC
EST: gi|110391622|gb|EC956610.1|EC956610
EST:     ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG                         GAGCCAAAGGCTGAAGGTGATTCACAGTTATGCAACTCAGTGAACTACCAC
genomic: ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAGgttaggtttt ... ttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC
EST: gi|351028718|gb|FQ433148.1|FQ433148
EST:     ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG                         GAGCCAAAGGCTGAAGGTGATTCACGGTTATGCAACTCAGTGAACTACCAC
genomic: ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAGgttaggtttt ... ttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC
EST: gi|22011495|gb|BQ796529.1|BQ796529
EST:     ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG                         GAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC
genomic: ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAGgttaggtttt ... ttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC
EST: gi|110377829|gb|EC942921.1|EC942921
EST:     ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG                         GAGCCAAAGGCTGAAGGTGATTCACAGTTATGCAACTCAGTGAACTACCAC
genomic: ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAGgttaggtttt ... ttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC
EST: gi|161716363|gb|FC068095.1|FC068095
EST:     ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG                         GAGCCAAAGGCTGAAGGTGATTCACAGTTATGCAACTCAGTGAACTACCAC
genomic: ACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAGgttaggtttt ... ttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgtggtatacatttttgagattctaacatattattttctgacttggtttcagGAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG
             atttttgagattctaa  TA-rich tract