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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaccacatactttataataaataatgattttgccattaacctgtgtgtactacaggcaatgatattcctgtattgctgtcatgtgcttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC

Basic information

species Vitis vinifera
transcript Vv11s0037g00210.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os09g38530.1 (Oryza sativa), 3'ss of exon 6
---gtaagaccacatactttataataaataatgattttgccatta------acctgtgtgtactacaggcaatgatattcctgtattgct---------gtcatgtgcttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
    ||      |||  ||| |  |  ||  || ||   || | |      |  ||  | | ||        | |  ||  || | || |          || | | |      |||||||||||||  | || ||||| || || ||||| ||||| ||  ||||| | |||||||| |||||||||||||| |||||||| ||| | ||||| || |
gtactagttttgcatgttttgtt-tggattctgtttcccccttcatgtgatagttgcctattctcttaatgttaaatttattgcaatgatttccattgaatctttttccctcattgcagGAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACTGATGATCAGATTCACTGGTTTTCTATTGTCAACTCTCTCATGATCGTGC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os08g17370.1 (Oryza sativa), 3'ss of exon 5
---------------------gtaagaccacatactttataataaataatgat-----tttgccattaacctgtgtgtactacaggcaatgatattcctgtattgctgtc-atgtgc----------------ttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGA----TGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
                      |  || |       |   |  |||| ||         | |  |||   | ||||| |||| | | | || || |  | | || |  || ||| |                 |   | |||||||||||||| | || ||||| |||||     ||||||||||| || |||||| | ||||| ||||| ||||||||||| ||||| |||||  | ||||||    
gtgagatatatgtgcacttttttccgatcgttctgctctaatgaaatgatcgcagtagctagaaattgttcagtgtgcactagatggagtgctaatattttgttaccatctatgcgtccttttgactattctgtcaatttgcagGAGAGTGATATCAAGTGGGCATCTCGCTGGCTGGGATACCTATCTACTGATGACGGATGACCAAATCCACTGGTTTTCCATTGTGAATTCCCTCATGATT----

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os06g44140.1 (Oryza sativa), 3'ss of exon 6
-------gtaagaccacata-ctttataataaataatgattttgccattaacctgtgtgtactacaggcaatgatattcctgtattgctgtcatgtgcttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
       || | |   || | | ||  |   |||   |||     |  |    |  |  |   |   ||     | ||  ||| |   ||     ||  || |||||||||||| ||| | |||||||| || || ||||| | |||||| |||||| | |||||||| || |||||||| || || || || ||  ||||||| || |
gtaatgtgtcaaatgccaaatcatttcagccaattcagatgcatacggtgtggttagcttggcatttgctgcattgtt--tgtgtccatggtggatgaatgatatgcagGAGAGCGATATCAAATGGGCGTCGCGGTGGGACAGCTACCTGCTGATGACGGATGATCAGATCCACTGGTTCTCCATCGTGAACTCGCTGATGATCGTGC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G409104_T01 (Zea mays), 3'ss of exon 6
-------------------------------------gtaagacca--catactttataataaataatgattttgccattaacctgtgtgta----------------ctacaggcaatgatattcctgtattgctgtcatgtgcttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
                                      || |||||  | || |  |  ||||   | |  |   |  | |||||     ||                ||  ||    | | || | | | ||  | |||| ||  ||   ||||||| |||  | | || ||||| || || ||||| ||||||||||||||||| || || ||||| || |||||||| |||||||||||  ||||||| || |
gttagtttcaactatttttcatcttgaacttttttgtctatgaccaaccttaatgcactataacagaagtctccactgtaaacctacagatagatggtatgttttttccttgagaagttcagatgcattttttagt-tcatatgtgtgccgtgcagGAAAGTCCTATCAAGTGGGCATCACGCTGGGACACCTACCTTCTGATGGCAGACGACCAAATCCATTGGTTTTCTATTGTCAATTCACTGATGATAGTCC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G006117_T03 (Zea mays), 3'ss of exon 2
gtaagaccacatactttataataaataatgattttgccattaacctgt--gtgtactacaggcaatgatattcctgtattgctgtca-------tgtgcttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
|||  |        || | |||   | ||  |       || | |||   |||||||    | |||| |  |  |||  || | | |       |     |  | | |||||||||||  | || ||||| || || ||||| ||||||||  ||||| |||||||||| |||||||||||||| ||||| || ||| | ||||| || |
gtacaagactgggattaagaattgcttattttaactttgtttagctgctagtgtactctttg-aatgtttcttttgtcatgattttaatggaacttccactaattttcagGAGAGTGAGATCAAGTGGGCGTCACGCTGGGACACCTACCTGTTGATGACCGATGATCAGATTCACTGGTTTTCTATTGTGAACTCTCTCATGATCGTGC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G046005_T02 (Zea mays), 3'ss of exon 5
gtaagaccacatactttataataaataatgattttgccattaacctg-tgtgtactacaggcaatgatattcctgtattgctgtc--atgtgcttggtat------gcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
            | | ||| | |   | ||  ||  | | | || |    |  | |  |     |||  ||  | || || | ||  || ||||||||||      ||||||||||||| | || ||||| ||||| ||||| |||||| |  | |||   ||||||||||||||||||||||| ||||| || ||| | ||||| || |
----------tgaatctatcacatgaactgcgttgtcaagttacttaacatacattttaaaatttgagtttgttttaatgttttctgatttgcttggtattgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATAGATGATCAAATTCACTGGTTTTCTATTGTGAACTCTCTCATGATCGTAC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G180575_T01 (Zea mays), 3'ss of exon 6
gtaagaccacatactttataataaataatg-attttgccattaacctgtgtgtactacaggcaatgatattcctgtattgctgtc--atgtgcttggtat------gcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
            | | ||| | | | | ||  || |    |||       |  | | ||     |||  |   | || || | ||  || ||||||||||      ||||||||||||| | || ||||| ||||| ||||| |||||| |  | |||   ||||||||||||||||||||||| ||||| || ||| | ||||| || |
----------tgaatctatcacataaactgcgttgtcaagttactaaacatacatttcaaaatttgagttcgttttaatgttttctgatttgcttggtattgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATAGATGATCAAATTCACTGGTTTTCTATTGTGAACTCTCTCATGATCGTAC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G039811_T01 (Zea mays), 3'ss of exon 6
--------gtaagaccacatactttataataaataatgattttgccattaacctgtgtgtactacaggcaatgatattcctgtattgctgtcatgtg--cttggtat-gcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
         | |||  |   |||   || |  |   |  ||| ||   |     ||||   ||        | ||||    ||  || | |||||    ||   | | ||||||||||||  | || ||||| || || ||||| ||||||||  ||||| | |||||||| ||||| |||||||| ||||| || ||| | ||||| || |
gtacgagactgagattaagaactgcttagtttaactttgtttagctgctg--tagtgtactctttgaatgtttatat----gtgatgatttcatggaacctcaattttgcagGAGAGTGAGATCAAGTGGGCATCACGTTGGGACACCTACCTGTTGATGACTGATGATCAGATTCATTGGTTTTCTATTGTGAACTCTCTCATGATCGTGC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G36550.1 (Glycine max), 3'ss of exon 6
gtaagaccacatactttataataaataatgattttgccattaacctgtgtgtactacaggcaatgatattcctgtattgctgtcatgtgcttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
        |  ||||  | |||   ||   | |     |  ||       ||   ||    |||   |||    | ||| | || | |  ||    || |||  ||||||||||| ||||| | ||| ||||||||||| ||||| |||||| |||| || |||||||||||||||||||||||||||||||||||||| |
-----gttagttact--acaatttgtagcaactgaattaccaaa------gtgacactaagaatcggatttagatgttgatttctttt--ttaccttgtagGCAAGTGATGTGAAGTGGGCATATCGCTGGGATACCTATCTTCTTATGGCCAATGACCAGATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTAC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G08130.1 (Glycine max), 3'ss of exon 6
gtaagaccacatactttataataaataatgattttgccattaacctgtgtgtactacaggcaatgatattcctgtattgctgtcatgtgcttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
|| ||   |  ||||  | |||   ||   |||     |  ||       ||   ||    |||   |||    | ||| | || | |  ||    || |||  ||||||||||| ||||| | ||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
gttag-ttagttact--acaatttgtagcaattgaattaccaaa------gtgacactaagaattggatttagatgttgatttctttt--ttaccttgtagGCAAGTGATGTGAAGTGGGCATATCGCTGGGATACCTATCTTCTAATGGCCGATGACCAGATTCACTGGTTTTCAATTGTCAATTCCTTGATGATTGTAC

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G28090.1 (Glycine max), 3'ss of exon 6
gtaagaccacatactttataataaataatgattttgccattaacctgtgtgtactacaggcaatgatattcctgtattgctgtcatgtgct--tggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
        |  | | ||||      |||||   |     |  | ||| |  |      ||   |||| ||| | ||||  |   || | |      | || |||||||| ||||||| ||||| ||||| |||||| |||| || || ||||| ||||| ||||||||||||||||||||| | ||||||||  ||||||| |
-----gttagtttcattattcgtggtaatggaataagggtgcatctgagaat----tgggttttgatgttcatttattttttaaatctccaaacattttgtagGAGAGTAATGTGAAGTGGGCATCTCGCTGGGATTCCTATCTCCTAATGGCTGATGACCAAATTCACTGGTTTTCAATTATTAATTCTTTATTGATTGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgtactacaggcaatgatattcctgtattgctgtcatgtgcttggtatgcagGAGAGTGATGTGAAATGGGCCTCTCGATGGGATACCTACCTTCTGATGGCCGATGATCAAATTCACTGGTTTTCAATTGTCAATTCTTTGATGATTGTTC
               aatgatatt  TA-rich tract