Sequence
atgc intronic sequence ATGC exonic sequence...gcaggttgaagaacttgcatgttaggaactaaaatcaatatgtatttttgttttcatccttacttaagaacaaaattgtttactttcttccactctgcagGAAAATGCAGAAGCAGATAGTTTCTGTTGTTTTGTTCGACTTTTGAGTGACTCTGTGGATCACTTTTGTCAACAATTGGATAACAGTTCAGTGGGTATCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g05350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G23560.1 (Glycine max), 3'ss of exon 5
----gcaggttgaagaacttgcatgttaggaactaaaatcaatatgtatttttgttttcatccttacttaagaacaaaattgtttactttcttccactctgcagGAAAATGCAGAAGCAGATAGTTTCTGTTGTTTTGTTCGACTTTTGAGTGACTCTGTGGATCACTTTTGTCAACAATTGGATAACAGTTCAGTGGGTATCC
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catttttgttcttgaaaattgtctgc-ataaataaatattagtgagcataaagaccataattttatcctttgtt---acttgtgctttgtcttgtttctattagGCAAATGTAGAAGCAGATAGTTTTTCTTGTTTTGTTCGAATCTTGGGTGACTCAGTGGATCATTTCTGCCAACAATTGGATAATAGTTCAAGTGGCATCC
upper sequence: Vv11s0016g05350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G12320.1 (Glycine max), 3'ss of exon 8
--gcaggttgaagaacttgcatgttaggaactaa-aatcaatatgtat--ttttgttttcatccttacttaagaacaaaattgtttactttcttccactctgcagGAAAATGCAGAAGCAGATAGTTTCTGTTGTTTTGTTCGACTTTTGAGTGACTCTGTGGATCACTTTTGTCAACAATTGGATAACAGTTCAGTGGGTATCC
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tttgttcttgatgattatccacataaataaatgttaatggacataaaggactttaattttttcatctgttattta-attatgctatgtttctttctatt----agGGAAATGTAGAAGCAGATAGAGTTTCTTGTTTTGTTCGAATCTTGGGTGACTCAGCGGATCATTTCTGCCAGCAATTGGATAATAGTTCGAGTGGCATCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgttttcatccttacttaagaacaaaattgtttactttcttccactctgcagGAAAATGCAGAAGCAGATAGTTTCTGTTGTTTTGTTCGACTTTTGAGTGACTCTGTGGATCACTTTTGTCAACAATTGGATAACAGTTCAGTGGGTATCC
tccttac putative branch site (score: 2)
ttgtttactttcttcc putative PPT
aaaattgtttacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaggttgaagaacttgcatgttaggaactaaaatcaatatgtatttttgttttcatccttacttaagaacaaaattgtttactttcttccactctgcagGAAAATGCAGAAGCAGATAGTTTCTGTTGTTTTGTTCGACTTTTGAGTGACTCTGTGGATCACTTTTGTCAACAATTGGATAACAGTTCAGTGGGTATCC
- - - -gaagaac
- - - - - - - - gcatgtt
- - - - - - - - - - - - - - - -aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa