1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaccaatctgattcttattatttgttaagcagaaagcaaatgaaaattattattatttgtttatatgtggtttttctctctcttaaaatgatttttctggtgttctagGTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCTAGGACATCTTCATGGACACTCTTAATGAAGGTTCCTGAGTCCAGTTTTC
species | Vitis vinifera |
transcript | Vv11s0016g05020.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCTCATAGAATCTTTTCAAGCAAAGTTCTTATGGAGTTGGAAAATCTG GTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCTEST: gi|110690027|gb|EE066769.1|EE066769
genomic: TAGCTCATAGAATCTTTTCAAGCAAAGTTCTTATGGAGTTGGAAAATCTGgtaccaatct ... ggtgttctagGTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCT
EST: TAGCTCATAGAATCTTTTCAAGCAAAGTTCTTATGGAGTTGGAAAATCTG GTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCTEST: gi|110693817|gb|EE070390.1|EE070390
genomic: TAGCTCATAGAATCTTTTCAAGCAAAGTTCTTATGGAGTTGGAAAATCTGgtaccaatct ... ggtgttctagGTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCT
EST: TAGCTCATAGAATCTTTTCAAGCAAAGTTCTTATGGAGTTGGAAAATCTG GTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCT
genomic: TAGCTCATAGAATCTTTTCAAGCAAAGTTCTTATGGAGTTGGAAAATCTGgtaccaatct ... ggtgttctagGTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCT
tatttgtttatatgtggtttttctctctcttaaaatgatttttctggtgttctagGTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCTAGGACATCTTCATGGACACTCTTAATGAAGGTTCCTGAGTCCAGTTTTC
tttttctg CT-rich tract
tcttaaaatgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaatctgattcttattatttgttaagcagaaagcaaatgaaaattattattatttgtttatatgtggtttttctctctcttaaaatgatttttctggtgttctagGTTTCCAGAGTTCCATATCTTCATTTGTTATCCCATCCCACTTGGCATTCTAGGACATCTTCATGGACACTCTTAATGAAGGTTCCTGAGTCCAGTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA