1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgggagtttttccttagtaaatcctcaacttcttttctttttcaagtatggaaagttgtgtttgagagcattagactaaccaactgtactggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTGTTGATCCGCGCTTGCAAAAGGATTACAACCACCACGAAATGGCTCGCA
species | Vitis vinifera |
transcript | Vv11s0016g03880.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGG GCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTEST: gi|110383107|gb|EC947458.1|EC947458
genomic: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGGgtaagttgtc ... ggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTT
EST: TGGTGGACTGG GCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTEST: gi|110691421|gb|EE069507.1|EE069507
genomic: TGGTGGACTGGgtaagttgtc ... ggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTT
EST: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGG GCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTEST: gi|110712846|gb|EE088247.1|EE088247
genomic: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGGgtaagttgtc ... ggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTT
EST: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGG GCGAGACCCTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTEST: gi|110373085|gb|EC937295.1|EC937295
genomic: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGGgtaagttgtc ... ggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTT
EST: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGG GCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTEST: gi|110372943|gb|EC937140.1|EC937140
genomic: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGGgtaagttgtc ... ggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTT
EST: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGG GCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTT
genomic: GACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGGgtaagttgtc ... ggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTT
gtatggaaagttgtgtttgagagcattagactaaccaactgtactggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTGTTGATCCGCGCTTGCAAAAGGATTACAACCACCACGAAATGGCTCGCA
gactaac putative branch site (score: 1)
aatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggagtttttccttagtaaatcctcaacttcttttctttttcaagtatggaaagttgtgtttgagagcattagactaaccaactgtactggaatcatagGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTGTTGATCCGCGCTTGCAAAAGGATTACAACCACCACGAAATGGCTCGCA
- - - - - - - - - - - cctcaac
- - - - - - - - - - - - - - - - - - - - -tcaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaccaa