1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctatttgttctcaaaatgttggcagtactagggttttataaccaatattttgctcagtattttttcttgtttcttacacatcaatgattataataagcagGCTGTTCAAGAATATAACAAGCGCCAATTAGCAACTACTACATCATATTCTCCATCTGGAGATGCAGTGCTGATAACAAAAGCAGATCTAGAAGGTTATC
species | Vitis vinifera |
transcript | Vv11s0016g02890.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAG GCTGTTCAAGAATATAAACA-GCGCCAATTTAGCA-CTACTACATCATATTEST: gi|83274947|gb|DV939043.1|DV939043
genomic: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAGgtaagcagta ... taataagcagGCTGTTCAAGAATATAA-CAAGCGCCAATT-AGCAACTACTACATCATATT
EST: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAG GCTGTTCAAGAATATAACAAGCGCCAATTAGCAACTACTACATCATATTCTEST: gi|110388085|gb|EC952801.1|EC952801
genomic: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAGgtaagcagta ... taataagcagGCTGTTCAAGAATATAACAAGCGCCAATTAGCAACTACTACATCATATTCT
EST: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAG CEST: gi|110388085|gb|EC952801.1|EC952801
genomic: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAGgtaagcagta ... taataagcag-
EST: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAG CEST: gi|110388085|gb|EC952801.1|EC952801
genomic: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAGgtaagcagta ... taataagcag-
EST: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAG CEST: gi|110729962|gb|EE106494.1|EE106494
genomic: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAGgtaagcagta ... taataagcag-
EST: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAG GCTGTTCAAGAATATAACAAGCGCCAATTAGCAACTACTACATCATATTCT
genomic: ATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAGgtaagcagta ... taataagcagGCTGTTCAAGAATATAACAAGCGCCAATTAGCAACTACTACATCATATTCT
tattttgctcagtattttttcttgtttcttacacatcaatgattataataagcagGCTGTTCAAGAATATAACAAGCGCCAATTAGCAACTACTACATCATATTCTCCATCTGGAGATGCAGTGCTGATAACAAAAGCAGATCTAGAAGGTTATC
ttcttac putative branch site (score: 2)
atcaatgattataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatttgttctcaaaatgttggcagtactagggttttataaccaatattttgctcagtattttttcttgtttcttacacatcaatgattataataagcagGCTGTTCAAGAATATAACAAGCGCCAATTAGCAACTACTACATCATATTCTCCATCTGGAGATGCAGTGCTGATAACAAAAGCAGATCTAGAAGGTTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - tcaaaat
- - - - - - - - - - - - - - - - - - - taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacatc