1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtactatcatgtagtatttttcacttatttattgagttgagttctttctgaagtatctgtaactttccgttatcaaaatagaccagtgttttgataatggtgtttctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACATGGAAAGTTGATACAAATCCATTTATTGGACATACTGCTAGCGTGGAAGA
species | Vitis vinifera |
transcript | Vv11s0016g02270.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGCTTGTAACTG GGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACATEST: gi|351012692|gb|FQ430255.1|FQ430255
genomic: AAAGCTTGTAACTGgtactatcat ... ctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACAT
EST: AGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTG GGGACTGCTAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACATEST: gi|349828396|gb|FQ417138.1|FQ417138
genomic: AGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTGgtactatcat ... ctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACAT
EST: AAGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTG GGGACTGCAAGAACTGTATTTATTTATGGGAACCCACATCAGAT
genomic: AGGCTATGCTATTGACTGGAGCCCTGTTGTCCCTGGAAAGCTTGTAACTGgtactatcat ... ctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGAT
aactttccgttatcaaaatagaccagtgttttgataatggtgtttctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACATGGAAAGTTGATACAAATCCATTTATTGGACATACTGCTAGCGTGGAAGA
tgtttctttcc CT-rich tract
ttatcaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatcatgtagtatttttcacttatttattgagttgagttctttctgaagtatctgtaactttccgttatcaaaatagaccagtgttttgataatggtgtttctttccaaagGGGACTGCAAGAACTGTATTTATTTATGGGAGCCTACATCAGATGCAACATGGAAAGTTGATACAAATCCATTTATTGGACATACTGCTAGCGTGGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA