Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctccgtttgcatggcctttttgttttcttctttgaatttgtgattgattaactttccttgtgtatgttgagactaatttgatccgtgttctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG

Basic information

species Vitis vinifera
transcript Vv11s0016g00700.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
------------------------------------gtaagctccgtttgcatggcctttttgttttcttctttgaatttgtgattgattaactttccttgtgtatgttgagactaatttgatccgtgttctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG
                                      |     |  |    | ||       |||| |     |  | | | |    ||        || || || ||    || |    ||  || || |  |  ||||||||||||||| |||||||||||||||||||| || || || |||||||| |||||||||||| | || ||||||
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttaccc-atatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG

upper sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
gtaagctccgtttg-----catggcctttttgttttcttct-----ttgaatttgtgattgattaactttc--cttgtgtatgttgagactaatttg---atccgtgt--tctggtatc------agAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG
|||||| | |  ||     |||  |   |   ||| ||| |     ||||  || |    || |  ||| |  |||||| |      |||   | |    | | || |    ||||| |      ||||||||||||||||||||||| |||||||| || || || || || ||||| |||||||||||| |||||||||||
gtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG

upper sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G008611_T01 (Zea mays), 3'ss of exon 7
gtaagctccgtttg-----catggcctttttgttttcttct-----ttgaatttgtgattgattaactttc--cttgtgtatgttgagactaatttgatccgtgttctggtat-----------cagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG
|||||| | |  ||     |||  |   |   ||| ||| |     ||||  || |    || |  ||| |  |||||| |      |||   | |  |   |  | | |  |           |||||||||||| ||||||||||| |||||||| || || || || || ||||| |||||||||||| |||||||||||
gtaagcactgcctggctctcatctctcctccatttacttgtcattgttgacattttagcagagtggcttgctacttgtgcagtacatgacatgtctatttactagtttagcttggtaacttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAG

upper sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G05530.4 (Glycine max), 3'ss of exon 7
gtaagctccgtttgcatggcctttttgttttcttctttgaattt---gtgattgattaactttccttg-tgtatgttga-gactaatttgatccgtgttctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG
           ||||  |||| |  || |  |    | |  |||   | |  |||    |   |  || | |    |   ||||| ||||    ||    ||||  ||| ||||| ||||| |||||||||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||||||
---gatcaaaattgc--ggccatcctgctaccgctatagtgttttgggaggctgaccgccacgcactgctatccactattgactactttggcttgt----tggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG

upper sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G17200.2 (Glycine max), 3'ss of exon 6
---------------------gtaagctccgtttgcatggcctttttgtttt-----cttctttgaatttgtgattgat----taactttccttgtgtatgt-tgagactaatttg-atccgtg-----------------ttctggtat--------cagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG
                      ||   | | ||  ||| ||  |||| ||||      | |||   || | |  |||       |  |  |    ||||| | ||| |  ||||   ||  ||                  || ||||||        ||| ||||| ||||| |||||||||||||| || || ||||| ||||| ||||| ||||||||||| ||||| ||||||
gtaagtttttatataccctctctatttttccttctcattgctattttattttgtggtttacttcagatattttgttggaagtgcagatacctgaatgtatatgtgaaatcaattcatatttgtagtatcatgatatggtaattatggtatgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685954|gb|EE063126.1|EE063126
EST:     GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTC                         AGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
genomic: GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTCgtaagctccg ... ctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
EST: gi|110728255|gb|EE103663.1|EE103663
EST:     GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTC                         AGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
genomic: GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTCgtaagctccg ... ctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
EST: gi|156737274|gb|EV241395.1|EV241395
EST:     GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTC                         AGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
genomic: GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTCgtaagctccg ... ctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
EST: gi|161705551|gb|FC057541.1|FC057541
EST:     GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTC                         AGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
genomic: GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTCgtaagctccg ... ctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
EST: gi|110685748|gb|EE062738.1|EE062738
EST:     GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTC                         AGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG
genomic: GTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTCgtaagctccg ... ctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattaactttccttgtgtatgttgagactaatttgatccgtgttctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG
                             taatttgat  TA-rich tract