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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttaagtttgttcaaagctcagtggtttttctaaaatctctatcaattttatctcagttgatccttttggtaatttggagtaccattcatgcctcttaaaatatctgagctaccttttatgcagGTGGATGCTACCCTTGACTTATTTAATGAACTACAACTGCAGCACCAAGCAGTAGCAACAAAGACTAAAACTCTTCATGATGCTTGTGACCGATTG

Basic information

species Vitis vinifera
transcript Vv11s0016g00350.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G04990.1 (Glycine max), 3'ss of exon 5
gtaattttaagtttgttcaaagctcagtggtttttctaaaatctctatcaattttatctcagttgatccttttggtaatttggagtaccattcatgcctcttaaaat-----atctgagctacc---ttttatgcagGTGGATGCTACCCTTGACTTATTTAATGAACTACAACTGCAGCACCAAGCAGTAGCAACAAAGACTAAAACTCTTCATGATGCTTGTGACCGATTG
|| ||   || ||     | || ||| |  ||  |   |  ||| |   | |  |   | |||||    | |   |||||||| | || |||  |  ||| |    |     || ||  | ||    | |  ||||||| ||||  ||||| ||||| || || || |||||  ||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| |  ||
gtgatg--aaattctccaacaggtcatt--ttcattctagttctgttctactactgggttagttgcgggtatc--taatttggtg-actattattttctcattcggttttccatttggacgacttgatctcgtgcagGTTGATGACACCCTAGACTTGTTCAACGAGCTACAGTTGCAGCATCAAGCAGTAGCTACAAAGACTAAAACACTTCATGATGCATGTGACAGGCTG

upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G73430.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaattttaagtttgttcaaagctcagtggtttttctaaaatctctatcaattttatctcagttgatccttttggtaatttggagtaccattcatgcctc-ttaaaatatctgagctaccttttatgcagGTGGATGCTACCCTTGACTTATTTAATGAACTACAACTGCAGCACCAAGCAGTAGCAACAAAGACTAAAACTCTTCATGATGCTTGTGACCGATTG
                          |  | ||||| | ||  | ||| ||||   | |    | ||| |     ||| ||    || ||    ||| || |||    |  || | |  ||  |  |||||| ||||  || |||||| ||||||| ||||| || || || || |||| |||| ||||||||||||||||||||||||| || ||||||||| ||
--------------------------gcaggttttcaacaagttttatgaattgc-tgtggtcttatcttgccaataaatta---taacacgtctgcttcattattgaacttgggatttctcctgcgcagGTTGATGAAACACTTGACCTATTTAACGAACTGCAGCTACAACATCAAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689568|gb|EC941180.1|EC941180
EST:     TAAACACATTAACAGAGCGCATACAAACATGTGATGATATACTTCATCAG                         GTGGATGCTACCCTTGACTTATTTAATGAACTACAACTGCAGCACCAAGCA
genomic: TAAACACATTAACAGAGCGCATACAAACATGTGATGATATACTTCATCAGgtaattttaa ... ttttatgcagGTGGATGCTACCCTTGACTTATTTAATGAACTACAACTGCAGCACCAAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatttggagtaccattcatgcctcttaaaatatctgagctaccttttatgcagGTGGATGCTACCCTTGACTTATTTAATGAACTACAACTGCAGCACCAAGCAGTAGCAACAAAGACTAAAACTCTTCATGATGCTTGTGACCGATTG
                                        ctacctttt  CT-rich tract
                        tcttaaaatat  TA-rich tract