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...atatcaagtcaattctaactgagaaatttatataaaattgcgtcagttaagaggccttacctgttattggttttattcttctggtttgttttctatacagGTTGCTTGTTGAGCAGTTAGCTAGAGTGAACCTGTCCTGTATGAGCTGCATTGAGAGGATGGCTTTTTGGATCAATTTGTATAATGCCTTGATTATGCAT
species | Vitis vinifera |
transcript | Vv11s0016g00190.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTGGAAAGAAACAGCTTGAGTATGCTGCTGGAGCTTTCAAAAGATTTAG GTTGCTTGTTGAGCAGTTAGCTAGAGTGAACCTGTCCTATATGAGCTGCATEST: gi|71859995|gb|DT009050.1|DT009050
genomic: GTTGGAAAGAAACAGCTTGAGTATGCTGCTGGAGCTTTCAAAAGATTTAGgtttactact ... ttctatacagGTTGCTTGTTGAGCAGTTAGCTAGAGTGAACCTGTCCTGTATGAGCTGCAT
EST: GTTGGAAAGAAACAGCTTGAGTATGCTGCTGGAGCTTTCAAAAGATTTAG GTTGCTTGTTGAGCAGTTAGCTAGAGTGAACCTGTCCTATATGAGCTGCAT
genomic: GTTGGAAAGAAACAGCTTGAGTATGCTGCTGGAGCTTTCAAAAGATTTAGgtttactact ... ttctatacagGTTGCTTGTTGAGCAGTTAGCTAGAGTGAACCTGTCCTGTATGAGCTGCAT
gttaagaggccttacctgttattggttttattcttctggtttgttttctatacagGTTGCTTGTTGAGCAGTTAGCTAGAGTGAACCTGTCCTGTATGAGCTGCATTGAGAGGATGGCTTTTTGGATCAATTTGTATAATGCCTTGATTATGCAT
gccttac putative branch site (score: 3)
tttgttttct putative PPT
ttattggttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcaagtcaattctaactgagaaatttatataaaattgcgtcagttaagaggccttacctgttattggttttattcttctggtttgttttctatacagGTTGCTTGTTGAGCAGTTAGCTAGAGTGAACCTGTCCTGTATGAGCTGCATTGAGAGGATGGCTTTTTGGATCAATTTGTATAATGCCTTGATTATGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -tcaagtc
- - - - - - - - - - -agaaatt
- - - - - - - - - - - - - - - -ataaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacctgt