Sequence
atgc intronic sequence ATGC exonic sequencegtaatgctgttgtcttgttcctttatgtatgcttttcacactttactggatgaaacacagatattttcttaaaattcaaaatgagggatttaatgggtctccatttgtttttctacatttcatgtgagtagGATCATGTTGAGGGCTACCTGGAATTGTCAGGCAAGACAAAGACATATTTTTCTACTGCTGTTGCTTTGTGGGATGCGGATTTCTATGTCAAAGTTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g01710.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G01660.1 (Glycine max), 3'ss of exon 6
gtaatgctgttgtcttgttcctttatgtatgcttttcacactttactggatgaaacacagatattttcttaaaattcaaaatgagggatttaatgggtctccatttgtttttctacatttcatgtgagtagGATCATGTTGAGGGCTACCTGGAATTGTCAGGCAAGACAAAGACATATTTTTCTACTGCTGTTGCTTTGTGGGATGCGGATTTCTATGTCAAAGTTGATG
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--------gtgatctttctctcctgc---cacttttcat--ttagatacataatcct---atatcttatttatatt----gtgctggctt--atttttgttaatgaaacaaaatatgtttgtgttaagcagAACCACATTGAGGGATACCTAGAACTATCAGCTAAGACAAAGATCTACTTTTCAACTGCTGTTGCCTTGTGGGATGCTGAATTTTATGTCAAAGTTGATG
upper sequence: Vv10s0116g01710.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G39070.1 (Glycine max), 3'ss of exon 7
gtaatgctgttgtcttgttcctttatgtatgcttttcacactttactggatgaaacacagatattttcttaaaattcaaaatgagggatttaatgggtctccatttgtttttctacatttcatgtgagtagGATCATGTTGAGGGCTACCTGGAATTGTCAGGCAAGACAAAGACATATTTTTCTACTGCTGTTGCTTTGTGGGATGCGGATTTCTATGTCAAAGTTGATG
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--------gtgatctttctctcctgc-----ctcttttcatttagatacataatcct---atatcttatttatatt----gtgctggctt--atttttgttgatgaaacaatatacatttgtgttaagcagAACCACATTGAGGGATACCTAGAACTATCAGCTAAGACAAAGATCTACTTTTCAATTGCTGTTGCCTTGTGGGATGCAGAATTTTATGTCAAAGTTGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaatgagggatttaatgggtctccatttgtttttctacatttcatgtgagtagGATCATGTTGAGGGCTACCTGGAATTGTCAGGCAAGACAAAGACATATTTTTCTACTGCTGTTGCTTTGTGGGATGCGGATTTCTATGTCAAAGTTGATG
atttaat putative branch site (score: 4)
atttgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgctgttgtcttgttcctttatgtatgcttttcacactttactggatgaaacacagatattttcttaaaattcaaaatgagggatttaatgggtctccatttgtttttctacatttcatgtgagtagGATCATGTTGAGGGCTACCTGGAATTGTCAGGCAAGACAAAGACATATTTTTCTACTGCTGTTGCTTTGTGGGATGCGGATTTCTATGTCAAAGTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT