Sequence
atgc intronic sequence ATGC exonic sequence...gcagctagttgtcttgaattgtgaagtcacccattttcttttctggagctgacctgttgtgcttcctttttttttgtttgtttttttttttttggagcagCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0092g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G22050.1 (Glycine max), 3'ss of exon 6
gcagctagttgtcttgaattgtgaagtcacccattttcttttctggagctgacctgttgt---gcttcctttttttttgt-ttgtttttttttttttggagcagCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGA
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----taaaatgtcttgatcttgaattttgcttttctttcctttcaaaccctaactattttctagaaggataacgcattgtatcattttctgcttcttggagcagCATGTTGAGGACCATCACCTCTATTCACTAAACTATTTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTGCAGCCTTGGAAA
upper sequence: Vv10s0092g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G30470.1 (Glycine max), 3'ss of exon 3
gcagcta-gttgtcttgaattgtgaagt-cacccattttcttttctggagctgacctgttgtgcttcctttttttttgtttgtttttttttttttggagcagCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGA
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-aagtaatattgtcttcaattttgcattgcttttgtttcagatcttcatactttccaataaaaactaacaccttttt-cttgtttctttctccttggaacagCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTAGCTGGAAGCCATGCTCCAGGTCTGGAAG
upper sequence: Vv10s0092g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G09970.1 (Glycine max), 3'ss of exon 6
-gcagctagttgtcttgaattgtgaagtcacccattttcttttctggagctgacctgttgtgcttcctttttttttgtttgtttttttttttttggagcagCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGA
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catatgtcttgatcttgaatttttcatttctttcctttcaaaccctaa-ctatttcctagaaagataacacattgtcatcatttcctgcttcttggaacagCATGTTGAGGACCATCACCTCTATTCACTAAACTATTTGCACTGGGGGGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTGCAGCCTTGGAAA
upper sequence: Vv10s0092g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G13610.1 (Glycine max), 3'ss of exon 2
gcagctagt--tgtcttgaattgtgaagt-cacccattttcttttctggagctgacctgttgtgcttcctttttttttgtttgtttttttttttttggagcagCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGA
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--aagtaataatgtcttgaattttgcattgcttttgtttcagatcttcatactttcctataaagactaacacattttt-cttgtttctttctccttggaacagCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAATTCCTGGAAGCCATGCTCCAGGTCTGGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagctgacctgttgtgcttcctttttttttgtttgtttttttttttttggagcagCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGA
agctgac putative branch site (score: 3)
cctgttgtgcttcctt CT-rich tract
ttcctttttttttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcagctagttgtcttgaattgtgaagtcacccattttcttttctggagctgacctgttgtgcttcctttttttttgtttgtttttttttttttggagcagCATGTTGAGGACCACCACCTATACTCACTAAATTATCTACACTGGGGTGATTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGCATTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - -tgtcttg
- - - - - - - - - - - - - tcaccca
- - - - - - - - - - - - - - - - - - - -tttctgg