Sequence
atgc intronic sequence ATGC exonic sequence...tttttgatgatctcttggagatcaaaactatgctgttggttataattgaagcagagttatcaagtatctggaaataatgatttttttttttgtgttgcagGAATATGCAGCTGCTGGCACTGTTAATCAAAATTATGCAAATATTCTCCTTATGCTTTTGCGACTTCGTCAGGCTTGTGACCACCCACTTCTTGTAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G23390.1 (Glycine max), 3'ss of exon 6
-tttttgatgatctcttggagatcaaaactatgctgttggttataattgaagcagagttatc-aagtatc-tggaaataatgatttttttttttgtgttgcagGAATATGCAGCTGCTGGCACTGTTAATCAAAATTATGCAAATATTCTCCTTATGCTTTTGCGACTTCGTCAGGCTTGTGACCACCCACTTCTTGTAAAAG
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gcctagcatacacttctgcaaattctaga-atatttttgttca--gctgatcttgtttttctgaagtattgtagatctgatattaaaaggttgtactttgcagGCATATGCTGCTGCTGGGACAGTGAGCCAAAACTATGCTAATATTCTTTTAATGCTTTTACGTCTCCGACAGGCTTGTGACCACCCGCTTCTTGTTAAAG
upper sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G43430.1 (Glycine max), 3'ss of exon 8
-tttttgatgatctcttggagatcaaaactatgctgttggttataattgaagcagagttatcaagtatc-tggaaataatgatttttttttttgtgttgcagGAATATGCAGCTGCTGGCACTGTTAATCAAAATTATGCAAATATTCTCCTTATGCTTTTGCGACTTCGTCAGGCTTGTGACCACCCACTTCTTGTAAAAG
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gcctagcatacacttccgcaaattctaga-atatttttgttca-gctgatcttatttttctgaagtgttgtagatctgatatgaaaagtttgtactttgcagGCATATGCTGCTGCTGGGACAGTGAGCCAAAACTATGCTAATATTCTTTTAATGCTTTTACGTCTCCGACAGGCTTGTGACCACCCGCTTCTTGTTAAAG
upper sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G50410.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------tttttgatgatctcttggagatcaaaactatgctgttggttataattgaagcagagttatcaagtatctggaaataatgatttttttttttgtgttgcagGAATATGCAGCTGCTGGCACTGTTAATCAAAATTATGCAAATATTCTCCTTATGCTTTTGCGACTTCGTCAGGCTTGTGACCACCCACTTCTTGTAAAAG
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tataaacataggttatggaggcattttcgttgaaaaaaatgttttgc-agtgattcctgatttc---ctgtcaagtatgtgaga----tgatatttttttct---ctgcagGCATATGCTGCTGCAGGAACTTTGAATCAAAACTATGCAAACATTCTTCTCATGCTTTTGCGACTACGCCAAGCTTGTGACCACCCCCAACTTGTTAAAA
upper sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G20010.1 (Arabidopsis thaliana), 3'ss of exon 6
tttttgatgatctcttggagatcaaaactatgctgttggt--tataattgaagcagagttatcaagtat-ctggaaataatgatttttttttttgtgttgcagGAATATGCAGCTGCTGGCACTGTTAATCAAAATTATGCAAATATTCTCCTTATGCTTTTGCGACTTCGTCAGGCTTGTGACCACCCACTTCTTGTAAAAG
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---tccatgtttctgagtgtcttgcaagtcttcatttcgtcctatgagagaacacaaactagtagctgtacccgataggatgataaattcattttccctgcagGCCTATGCTGATGCGGGAACTTTGAGTCAAAACTACGCAAATATTCTTCTGTTGCTTTTGCGACTACGCCAAGCTTGTGACCACCCACAACTTGTTAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaagcagagttatcaagtatctggaaataatgatttttttttttgtgttgcagGAATATGCAGCTGCTGGCACTGTTAATCAAAATTATGCAAATATTCTCCTTATGCTTTTGCGACTTCGTCAGGCTTGTGACCACCCACTTCTTGTAAAAG
tttttttttttgtgtt CT-rich tract
tatctggaaataatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttgatgatctcttggagatcaaaactatgctgttggttataattgaagcagagttatcaagtatctggaaataatgatttttttttttgtgttgcagGAATATGCAGCTGCTGGCACTGTTAATCAAAATTATGCAAATATTCTCCTTATGCTTTTGCGACTTCGTCAGGCTTGTGACCACCCACTTCTTGTAAAAG
- - - - - -ctcttgg
- - - - - - - - - - atcaaaa
- - - - - - - - - - - - - -ctatgct
- - - - - - - - - - - - - - - - - - - - - - - - aagcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaata