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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctacattttctttttcaatagcctgatttatccttatgttaacagttctatgttgaagattggcaccagcaattcttttcagaattaaagttttgtgttttatgcttttccccagtggtagtatttttttttgataggaagtggtagtattagtaatctaagtgaacatttttcagGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCT

Basic information

species Vitis vinifera
transcript Vv10s0071g00210.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G23660.1 (Glycine max), 3'ss of exon 7
gtaagctacattttctttttcaatagcctgatttatccttatgttaacagttctatgttgaagattggcaccagcaattcttttcagaattaaagttttgtgttttatgctttt-ccccagtggtagtatttttttttgataggaagtggtagtat-tagtaatctaagtgaacatttttcagGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCT
                                                                                          |||  |||    |||      ||    |   | || |  |  ||     |      ||| |   || |  |||| | | ||||  ||   ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
-----------------------------------------------------------------------------------------gtaagatttcccatttatcatattgattcttttagttgattcattagggaacttttggtgctgaaatctcataatttgattgaatgtta--cagGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACAT

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G43230.1 (Glycine max), 3'ss of exon 6
gtaagctacattttctttttcaatagcctgatttatccttatgttaacagttctatgttgaagattggcaccagcaattcttttcagaattaaagttttgtgttttatgcttttccccagtggtagtatttttttttgataggaagtggtagtattagtaatctaagtgaacatttttcagGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCT-----------------
                                                                                   | ||| ||    |||    |  |||   ||     ||| |    |||         | ||   ||  |    |  |||| | | ||||  ||   ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| || |||||||| |                 
----------------------------------------------------------------------------------gtaagatttcccattt---atcctattggttcttttagttgattcattagggaacttttggtgctgaaatctctcataatttgattgaatgtta--cagGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACATGTAAGTTTCTGCAGGAT

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G00320.1 (Glycine max), 3'ss of exon 7
gtaagctacattttctttttcaatagcctgatttatccttatgttaacagttctatgttgaagattggcaccagcaattcttttcagaattaaagttttgtgttttatgcttttccccagtggtagtatttttttttgataggaagtggtagtattagtaatctaagtgaacatttttcagGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCT
                                                                             ||  | ||||  ||  |||| ||  | |  |  | ||   | ||| |   || || |||||||      ||  |||  |  |||| |   |||| || |  ||||||||||| |||||||||||||| ||||||||||| ||||| || ||||| || |||||||| |
----------------------------------------------------------------------------gttgctgtcagt-ttctagttgtgattctctttatattaagctgtgatctcatattgttttgatgc----tgaaagttctcataatttggttgaatatgtgacagGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCCGGTGCTAATATTCAAACTT

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 3'ss of exon 8
gtaagctacattttctttttcaatagcctgatttatccttatgttaacagttctatgttgaagattggcaccag-caattcttttcagaattaaagttttgtgttttatgcttttccccagtggtagtatttttttttgataggaagtggtagtattagtaatctaagtgaacatttttcagGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCT
                                                            |||     || ||  |   | |||  | | ||  | ||     | |||||||    |    ||  ||| ||   | ||  || |   |   | | ||  |  |  |  | || || |  ||||| ||||| || |||||||| |||||||||| ||| || |||||||||||  | ||||||||||
----------------------------------------------------------gtaagcccttcatcattctgatttttgtatatttttaatt----atcttatgctaagtcgt--tgagagttttaggtcttcgtacgtc-tcacaatgttgtt--ttgatattaaaatata-cagGGGAAGCTAATAGAGATTCATTTTAGTGAAAGTGGAAAGATATCGGGTGCTCAAATTCAAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttttttttgataggaagtggtagtattagtaatctaagtgaacatttttcagGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCT
       ttttgat  putative branch site (score: 4)
                                             catttttc  putative PPT
                          tattagtaatctaa  TA-rich tract