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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgctggatgcttgtattctttggttctgttgcatagcttagctagatactggccatattttggaacattagtggatcttatagtgaatctcatccattttttaccaattgcacatcgctgaccttcaaagtttgtccttacagGTACGTGAAAACATATTATTTGGATCTAATTTTGAACCTGCACGGTATTGGAAGGCTATTGCTGTAACTGCATTACAACATGACCTTGACTTACTACCT

Basic information

species Vitis vinifera
transcript Vv10s0003g04450.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04450.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G46940.1 (Glycine max), 3'ss of exon 19
gtgagttgctggatgcttgtattctttggttctgttgcatagcttagctagatactggccatattttggaacattagtggatcttatagtgaatctcatccattttttaccaattgcacatcgctgaccttcaaag-tttgtccttacagGTACGTGAAAACATATTATTTGGATCTAATTTTGAACCTGCACGGTATTGGAAGGCTATTGCTGTAACTGCATTACAACATGACCTTGACTTACTACCT
                                           | || |  |   ||   ||  ||   ||  ||  |  || || |  | || |  ||  |  |   |  |||  |||||   | |   | || | ||| |  |  ||||| ||||||||||||||||||||||| || ||||||  || ||  ||| ||||||  |||| | | |||||  |||| ||||| ||  |||||||||||
------------------------------------------gtgagttgcagcttgcttatgattc--aatttttatctatttttt--taaaccaaatt-acgtgaaaaaaataccacatttatcattctgaatgctttcttttctcagGTTCGTGAAAACATATTATTTGGATCAAAATTTGAATATGAACAATATCGGAAGGTCATTGATATGACTGCTCTACAGCATGATCTCAACTTACTACCT

upper sequence: Vv10s0003g04450.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G30420.1 (Arabidopsis thaliana), 3'ss of exon 17
gtgagttgctggatgcttgtattctttggttctgttgcatagcttagctagatactggccatattttggaacattagtggatcttatagtgaatctcatccattttttaccaattgcacatcgctgaccttcaaagtttgt-ccttacagGTACGTGAAAACATATTATTTGGATCTAATTTTGAACCTGCACGGTATTGGAAGGCTATTGCTGTAACTGCATTACAACATGACCTTGACTTACTACCT
              |   ||   ||||  ||||  ||| | |||  |  | | | |  |  |||| |      || || | | || |  | |||    || |||  |||   |     | || || |     |  || | | | || ||| | ||||||||||| |||||||| ||  |||||||  ||| | | ||||||| |||||||| ||| ||||| |||||||| || ||||| ||  | || 
--------------gtgagtcccctttacttct--tgc-tggctctga-aaacattaactgtattataactttttggtagctttttt--ttaattcggtcaattagttaggcaggaagcgtc-ctaataca-agtgtctatgcattgcagCTGCGTGAAAACATTTTATTTGGGTCAGATTTTGAGTCTGAAAGATATTGGAGGGCTATTGATGTGACTGCCTTACAACACGATCTTGATTTGTTTCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatccattttttaccaattgcacatcgctgaccttcaaagtttgtccttacagGTACGTGAAAACATATTATTTGGATCTAATTTTGAACCTGCACGGTATTGGAAGGCTATTGCTGTAACTGCATTACAACATGACCTTGACTTACTACCT
                           cgctgac  putative branch site (score: 3)
                                          tttgtcctt  putative PPT
       attttttaccaatt  TA-rich tract