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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttacatatggctactggttttcttgtagcttaccttgatcatttgggttattgttatttattattgttggactttatagctgcttggatttcctgtgttgttgcattaatgttgattgagtatatatttctaaatttctgctaagtttaactcgcttgtttcacccattttgaacacagATCTTCGTGTCTTGAATGAGTATCAACAACTTCAATCTTTCTCTGCATTCAACAATATCTTCAACAATACTAGAATTTTTGGCATTTATGCTAGCACT

Basic information

species Vitis vinifera
transcript Vv10s0003g03230.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G01720.1 (Glycine max), 3'ss of exon 7
gtaagttttacatatggctactggttttcttgtagcttaccttgatcatttgggtta---ttgttatttattattgttggactttatagctgcttggatttcctgtgttgttgcattaat-gttgattgagtat-atatttctaaatttctgctaagtttaactcgcttgtttcacccattttgaacacagATCTTCGTGTCTTGAATGAGTATCAACAACTTCAATCTTTCTCTGCATTCAACAATATCTTCAACAATACTAGAATTTTTGGCATTTATGCTAGCACT
||||||||||| | |   | || ||   ||  |   ||   |     |  ||  |||   |||| |||   |    ||  ||| |  |  |   ||  |    ||   |    | |   |  |   || ||| | ||   |    |  |||  ||  ||||||| | ||        ||  | |||  ||||||||  |||  ||||||| ||||||||  |||||||||| ||||||||||||| ||||||||| |||||  || | |||||||| ||||| ||||||
gtaagttttacctgtactttcttgtccgctgtttagtttggtcagctacgtgctttaacattgtcattatcttaaattaaactctccatttatctgtctaatgtgcacttcaccttccttcatcattttagtttcatgcatacccaactctaatat-tttaacttgttttgcatgtacaact-gaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCAACAGTATCTTCAATAATACAGGACTGTTTGGCATCTATGCAAGCACT

upper sequence: Vv10s0003g03230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G21380.1 (Glycine max), 3'ss of exon 7
gtaagttttacatatggctactggttttcttgtagcttaccttgatcatttgggttattgttatttattattgttggactttatagctgcttggatttcctgtgttgttgcattaatgttgattgagtatatatttctaaatttctgctaagtttaactcgcttgtttcacccattttgaacacagATCTTCGTGTCTTGAATGAGTATCAACAACTTCAATCTTTCTCTGCATTCAACAATATCTTCAACAATACTAGAATTTTTGGCATTTATGCTAGCACT
                                                                               | | | |||  |  ||  | |    ||  | ||| | | ||  ||   || ||| |     |  |||  ||  ||||||| | ||        | |  ||||  ||||||||  |||  ||||||| ||||| ||  |||||||||| ||||||||||||| ||||||||| |||||  || | |||||||||||||| ||||||
------------------------------------------------------------------------------ttatctggctaatgtgaacttc-accttccttcatcatt-ttagtttcatacatactc----aactctaatat-tttaacttgttttgcgtgtac-tactgaatccagATCTTAATGTGCTGAATGAATATCAGCAGATTCAATCTTTTTCTGCATTCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACT

upper sequence: Vv10s0003g03230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G43000.1 (Glycine max), 3'ss of exon 8
gtaagttttacatatggctactggttttcttgtagcttaccttgatcatttgggttattgttatttattattgttggactttatagctgcttggatttcctgtgttgttgcattaatgttgattgagtatatatttctaaatttctgctaa-gtttaactcgcttgtttcacccattttgaacacagATCTTCGTGTCTTGAATGAGTATCAACAACTTCAATCTTTCTCTGCATTCAACAATATCTTCAACAATACTAGAATTTTTGGCATTTATGCTAGCACT
                                                                                       | ||||| | |     ||   |   | | | ||   ||   |||||||  || ||     |||| | || |     |  ||  |  || |  |||  ||| ||||||||||||||||||  |||||||  |||| ||||| ||||||||||||| | |||||||||||||  |  | |||||||| ||||| ||||| 
------------------------------------------------------------------------------------cctttcttggctatatgaagtcaatt--tcactattttctgttcatatattagtatatcatctctaatgctttatcttgtgcttatatgcaatg-gaatccagTTCTTCGTGTCTTGAATGAACATCAACAGATTCATTCTTTTTCTGCATTCAACAGTCTCTTCAACAATACAGGGCTATTTGGCATATATGCAAGCACA

upper sequence: Vv10s0003g03230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G02390.1 (Glycine max), 3'ss of exon 7
gtaagttttacatatggctactggttttcttgtagcttaccttgatcatttgggttattgttatttattattgttggactttatagctgcttggatttcctgtgttg-ttgcattaatgttgattgagtatatatttctaaatttctgctaagtttaactcgcttgtttcacccattttgaacacagATCTTCGTGTCTTGAATGAGTATCAACAACTTCAATCTTTCTCTGCATTCAACAATATCTTCAACAATACTAGAATTTTTGGCATTTATGCTAGCACT
                                                                             ||| |     | ||||| | |     ||   || || || | |   || | ||||||||  |  ||     || |   | ||| |    ||  |  || |  |||  ||| ||||||||||||||||||  |||||||  |||| ||||| ||||||||||||| | |||||||||||||  |  | |||||||| ||||| ||||| 
-----------------------------------------------------------------------------actct----tttcttggttatatgaagtcaatttcactattttctgttca-tatatattattgtatcatctctga---tgacttgtgc-ttatatgcaatg-gaatccagTTCTTCGTGTCTTGAATGAACATCAACAGATTCATTCTTTTTCTGCATTCAACAGTCTCTTCAACAATACAGGGTTATTTGGCATCTATGCAAGCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttctaaatttctgctaagtttaactcgcttgtttcacccattttgaacacagATCTTCGTGTCTTGAATGAGTATCAACAACTTCAATCTTTCTCTGCATTCAACAATATCTTCAACAATACTAGAATTTTTGGCATTTATGCTAGCACT
                                       cccatttt  CT-rich tract
      taaatttct  TA-rich tract