1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttttgttcaacactatttttatcttatttcgttatctacattgcaagcctgaactaagctcaatgaatgagtgccaacatattctgtttcactgtgcagGAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCA
species | Vitis vinifera |
transcript | Vv10s0003g03120.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCATGAAAGGGCTTTCACAGTGGGTATTGGCGGCCCTGTTGGTACTGG GAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGEST: gi|110377199|gb|EC942256.1|EC942256
genomic: TTCCATGAAAGGGCTTTCACAGTGGGTATTGGCGGCCCTGTTGGTACTGGgtatttcttc ... cactgtgcagGAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAG
EST: GCTTTCACAGTGGGTATTGGCGGCCTTGTTGGTACTGG GAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGEST: gi|110370143|gb|EC934323.1|EC934323
genomic: GCTTTCACAGTGGGTATTGGCGGCCCTGTTGGTACTGGgtatttcttc ... cactgtgcagGAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAG
EST: TTCCATGAAAGGGCTTTCACAGTGGGTATTGGCGGCCCTGTTGGTACTGG GAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGEST: gi|30297878|gb|CB974672.1|CB974672
genomic: TTCCATGAAAGGGCTTTCACAGTGGGTATTGGCGGCCCTGTTGGTACTGGgtatttcttc ... cactgtgcagGAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAG
EST: TTCCATGAAAGGGCTTTCACAGTGGGTATTGGCGGCCCTGTTGGTACTGG GAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAG
genomic: TTCCATGAAAGGGCTTTCACAGTGGGTATTGGCGGCCCTGTTGGTACTGGgtatttcttc ... cactgtgcagGAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAG
aagcctgaactaagctcaatgaatgagtgccaacatattctgtttcactgtgcagGAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCA
ttctgtttc CT-rich tract
aacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgttcaacactatttttatcttatttcgttatctacattgcaagcctgaactaagctcaatgaatgagtgccaacatattctgtttcactgtgcagGAAAACAGCTCTGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCA
- - - - caacact
- - - - - - - - - - - - - - - - - - - - - -gcaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccaaca