Sequence
atgc intronic sequence ATGC exonic sequencegtgataaatttaattgccttttcaattatttattcctttcttcattttccttgcttcatgcgattctttgtaatctattgtgcatgtcataaaagcagATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 6
gtgataaatttaattgccttttcaattatttattcctttct--tcattttccttgcttcatgcgattc---tttgtaatctattgtgcatgtcataaaagcagATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAG
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gtgattattttatcctttcttgctgctttgtatccctgtcacgtgtgtgtgtatgtgttctatattttaagcttaagattaattatcaatgtctct---gcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTTAGAGCGGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAG
upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G11630.1 (Glycine max), 3'ss of exon 4
gtgataaatttaattgccttttcaattatttattcctttcttcattttccttgcttcatgcgat-tctttgtaatctattgtgcatgtca---taaaagcagATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAG
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gtgattattttatcctttcttgctgctttgtatccctctca-catttgtgtgtatatgtgttctatttttaaaacttagattaattatcaatgtctctgcagATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTCAGAGCAGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAG
upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ28200 (Selaginella moellendorffii), 3'ss of exon 4
gtgataaatttaattgccttttcaattatttattcctttcttcattttccttgcttcatgcgattctttgtaatctattgtgcatgtcataaaagcagATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAG
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---------------------------------gtatgctgtctttttgtcttttcggtgacaatgtttacg-tatgcaactctcttttgtaattcagATACGCGAGACACCACACAAGAAGCATCATAAATTTATTGAGTTTTACGATGTCAGGGCAGCTGAAGCGGCGCTAAGAGCGCTGAACAGAAGCGATATTG
upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ29695 (Selaginella moellendorffii), 3'ss of exon 3
gtgataaatttaattgccttttcaattatttattcctttcttcattttccttgcttcatgcgattctttgtaatctattgtgcatgtcataaaagcagATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAG
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-----------------------gtatgcttgtcttttcggtgacaacgtttacgt-atgcaactct-------cttttgt----------aattcagATACGCGAGACACCACACAAGAAGCATCATAAATTTATTGAGTTTTACGATGTCAGGGCAGCTGAAGCGGCGCTAAGAGCGCTGAACAGAAGCGATATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttccttgcttcatgcgattctttgtaatctattgtgcatgtcataaaagcagATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAG
taatctatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgataaatttaattgccttttcaattatttattcctttcttcattttccttgcttcatgcgattctttgtaatctattgtgcatgtcataaaagcagATAAGGGAAACACCACACAAGAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCACTTAGGTCATTAAATAGGAGTGACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC