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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttcactctgagctcaagattgtaagatttattttggagcatattatcagttgaggtttttgtatttttgacaaatttgtgcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG

Basic information

species Vitis vinifera
transcript Vv10s0003g02590.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045795|gb|FQ440980.1|FQ440980
EST:     CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATG                         GTTGAGGGAGAAGGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
genomic: CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATGgtatcttcac ... gcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
EST: gi|110384739|gb|EC949198.1|EC949198
EST:     CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATG                         GTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTCTTGGTGAA
genomic: CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATGgtatcttcac ... gcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
EST: gi|110732518|gb|EE107876.1|EE107876
EST:     CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATG                         GTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
genomic: CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATGgtatcttcac ... gcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
EST: gi|349832459|gb|FQ421020.1|FQ421020
EST:     CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATG                         GTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
genomic: CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATGgtatcttcac ... gcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
EST: gi|349808085|gb|FQ402476.1|FQ402476
EST:     CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATG                         GTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
genomic: CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATGgtatcttcac ... gcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
EST: gi|110391854|gb|EC956857.1|EC956857
EST:     CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATG                         GTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTCTTGGTGAA
genomic: CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATGgtatcttcac ... gcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
EST: gi|110699183|gb|EE075958.1|EE075958
EST:     CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATG                         GTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA
genomic: CTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATGgtatcttcac ... gcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagcatattatcagttgaggtttttgtatttttgacaaatttgtgcttttgaagGTTGAGGGAGAAAGGACTTATCATCAGAGAATAGCTACCATTTTTGGTGAAGTTGAATCTGAG
                              ttttgac  putative branch site (score: 3)
                                            tgctttt  putative PPT
                     tttttgtatttttgac  TA-rich tract