Sequence
atgc intronic sequence ATGC exonic sequencegtggaactgattgcccatcttatgtctctgtactttgtttaatttggaagtttattttctttctccttattttgtaggttacaaacatgtggtcctttaccaactaaagttctctatttgattgatgaaagcagATAAAAGGTGATTCACCCGAAATGGTGGAGTACATTGGGATGAAGAATTTGATTAACGCTGTAAAGGAGGGTGTTGGCCTTCGAACTGGAAAACTCATAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G12480.1 (Glycine max), 3'ss of exon 6
gtgga--actgattgcccatcttatgtctctgtactttg--tttaatttggaagtttattttctttctccttattttgtaggtt-----acaaacatgtggtcctttaccaactaaagttctctatt---tgattgatgaaagcagATAAAAGGTGATTCACCCGAAATGGTGGAGTACATTGGGATGAAGAATTTGATTAACGCTGTAAAGGAGGGTGTTGGCCTTCGAACTGGAAAACTCATAT
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gtagctttctgattctccttttgttaacattatcttcagagtcaaatttgttcttgtcaatttaatttggaagtccagtcggtcttcaagctaatttgtgaaattcttgaagcttttttttcttagttattggttgtttaaaacagATAAAAGGTGACTCACCAGAAAAGGTAGAGTACATAGGAATGAGAAATTTGATCAAGGCTGTGAAGGACAATCTTGGACTTCGAAGAGGAAAGCTATTAT
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G29330.1 (Glycine max), 3'ss of exon 6
gtgga--actgattgcccatcttatgtctctgtactttg-------tttaat-ttggaagtttattttctttctcc--ttattttgtaggttacaaacatgtggtcctttaccaactaaagttctctatt---tgattgatgaaagcagATAAAAGGTGATTCACCCGAAATGGTGGAGTACATTGGGATGAAGAATTTGATTAACGCTGTAAAGGAGGGTGTTGGCCTTCGAACTGGAAAACTCATAT
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gtagcttactgattcttcttttgttgacattatcttcagagtcagatttgttcttgtcaatttaatttggaagtccagttggtctgcaagct-catttgggaaattcttga--agcttttttttcttatttattggttgttgaaaacagATAAAAGGTGACTCACCAGAAAAGGTAGAGTACATAGGAATGAGAAATTTGATCAAGGCCGTGAAGGACAATCTTGGACTTCGAAGAGAAAAGCTATTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27584507|gb|CB007202.1|CB007202EST: GGGAATCAAGTTCTTTGAACCGGAG ATAAAAGGTGATTCACCCGAAATGGTGGAGTACATTGGGATGAAGAATTTG
genomic: GGGAATCAAGTTCTTTGAACCGGAGgtggaactga ... atgaaagcagATAAAAGGTGATTCACCCGAAATGGTGGAGTACATTGGGATGAAGAATTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacaaacatgtggtcctttaccaactaaagttctctatttgattgatgaaagcagATAAAAGGTGATTCACCCGAAATGGTGGAGTACATTGGGATGAAGAATTTGATTAACGCTGTAAAGGAGGGTGTTGGCCTTCGAACTGGAAAACTCATAT
tatttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggaactgattgcccatcttatgtctctgtactttgtttaatttggaagtttattttctttctccttattttgtaggttacaaacatgtggtcctttaccaactaaagttctctatttgattgatgaaagcagATAAAAGGTGATTCACCCGAAATGGTGGAGTACATTGGGATGAAGAATTTGATTAACGCTGTAAAGGAGGGTGTTGGCCTTCGAACTGGAAAACTCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG